SMTL ID : 6e5w.3 (3 other biounits)

Crystal structure of human cellular retinol binding protein 3 in complex with abnormal-cannabidiol (abn-CBD)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x HVD: (1'R,2'R)-5'-methyl-6-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,4-diol(Non-covalent)

HVD.1: 23 residues within 4Å: Chain A: Q.14, M.17, Y.20, L.21, I.26, V.30, A.34, L.37, P.39, K.41, T.54, S.56, F.58, R.59, N.60, Y.61, L.75, S.77, V.78, Q.98, L.120, Q.129 Ligands: GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.26, A:T.54, A:Y.61, A:Y.61, A:L.75, A:V.78 Hydrogen bonds: A:Q.14, A:Q.129

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: K.41, V.52, T.54, Y.61, V.63, W.107, H.109, L.118, L.120 Ligands: HVD.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.41 Water bridges: A:E.73, A:W.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvaroli, J.A. et al., Abnormal Cannabidiol Modulates Vitamin A Metabolism by Acting as a Competitive Inhibitor of CRBP1. Acs Chem.Biol. (2019)

Release Date

2019-02-13

Peptides

Retinol-binding protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Retinol-binding protein 5

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