SMTL ID : 6ebq.1

Crystal Structure of the Flavoprotein NrdI from Aerococcus urinae in Oxidized Form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: S.27, T.28, S.30, N.31, N.32, T.33, P.66, T.67, Y.68, S.69, G.70, G.71, G.109, N.110, F.113, S.116, F.117, A.118, L.138 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.68, A:Y.68 Hydrogen bonds: A:T.28, A:N.32, A:N.32, A:T.33, A:T.67, A:T.67, A:Y.68, A:Y.68, A:S.69, A:G.70, A:G.71, A:N.110, A:S.116, A:A.118, A:L.138, A:L.138 Water bridges: A:K.72 pi-Stacking: A:F.113, A:F.113 FMN.2: 17 residues within 4Å: Chain B: S.27, T.28, S.30, N.31, N.32, T.33, P.66, T.67, Y.68, S.69, G.109, N.110, F.113, S.116, F.117, A.118, L.138 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.68, B:Y.68 Hydrogen bonds: B:T.28, B:N.32, B:N.32, B:N.32, B:T.33, B:T.67, B:T.67, B:Y.68, B:S.69, B:N.110, B:S.116, B:A.118, B:L.138, B:L.138 pi-Stacking: B:F.113, B:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaesi, E.J. et al., Metal-free class Ie ribonucleotide reductase from pathogens initiates catalysis with a tyrosine-derived dihydroxyphenylalanine radical. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-19

Peptides

Protein NrdI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein NrdI