SMTL ID : 6eno.1

Double cubane cluster oxidoreductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

2 x BJ8: Double cubane cluster(Non-covalent)

BJ8.1: 21 residues within 4Å: Chain A: C.76, V.77, Y.78, C.114, L.116, I.117, E.141, T.143, C.144, K.147, T.283, P.284, C.309, R.313, V.339, C.341, C.343, L.371, C.374, P.376, Y.377 7 PLIP interactions: 7 interactions with chain A, Salt bridges: A:E.141 Metal complexes: A:C.76, A:C.114, A:C.144, A:C.309, A:C.341, A:C.374 BJ8.5: 21 residues within 4Å: Chain B: C.76, V.77, Y.78, C.114, L.116, I.117, E.141, T.143, C.144, K.147, T.283, P.284, C.309, R.313, V.339, C.341, C.343, L.371, C.374, P.376, Y.377 7 PLIP interactions: 7 interactions with chain B, Salt bridges: B:E.141 Metal complexes: B:C.76, B:C.114, B:C.144, B:C.309, B:C.341, B:C.374

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: G.1, A.2, N.4, R.5, W.8, D.19 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.8 Hydrogen bonds: A:G.1, A:G.1, A:N.4, A:R.5 Salt bridges: A:R.5 CIT.6: 6 residues within 4Å: Chain B: G.1, A.2, N.4, R.5, W.8, D.19 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.8 Hydrogen bonds: B:G.1, B:G.1, B:N.4, B:R.5 Water bridges: B:D.19, B:D.52, B:D.52 Salt bridges: B:R.5

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: F.21, I.53, H.54, L.94, C.95, G.96, F.123, C.129, Y.131, F.243, I.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.54, A:C.95 GOL.4: 1 residues within 4Å: Chain A: E.320 No protein-ligand interaction detected (PLIP) GOL.7: 11 residues within 4Å: Chain B: F.21, I.53, H.54, L.94, C.95, G.96, F.123, C.129, Y.131, F.243, I.287 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.54, B:C.95 GOL.8: 1 residues within 4Å: Chain B: E.320 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeoung, J.H. et al., ATP-dependent substrate reduction at an [Fe8S9] double-cubane cluster. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-03-14

Peptides

Dehydratase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dehydratase family protein