SMTL ID : 6eq9.1 (1 other biounit)

Crystal structure of JNK3 in complex with AMP-PCP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: Q.40, D.172 Ligands: ACP.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.172, H2O.3, H2O.6

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: V.83, N.84, H.85, I.88, I.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.83, A:H.85 Water bridges: A:S.90 NA.3: 4 residues within 4Å: Chain A: I.241, T.246, R.266, P.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.267

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 6 residues within 4Å: Chain A: M.124, R.130, V.162, K.163, S.164, C.166 No protein-ligand interaction detected (PLIP)

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.5: 22 residues within 4Å: Chain A: I.35, G.36, S.37, G.38, A.39, Q.40, G.41, V.43, A.56, K.58, I.89, M.111, E.112, M.114, N.117, K.156, S.158, N.159, V.161, L.171, D.172 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.38, A:Q.40, A:Q.40, A:K.58, A:E.112, A:M.114, A:N.117, A:K.156, A:S.158 Water bridges: A:K.58, A:S.158, A:D.172 Salt bridges: A:K.58

1 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)

C15.6: 11 residues within 4Å: Chain A: G.180, T.181, I.200, L.201, G.202, G.204, Y.205, Y.233, I.234, Q.256, V.259 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.233, A:I.234, A:Q.256, A:V.259 Hydrogen bonds: A:T.181, A:G.204 Water bridges: A:S.182, A:Y.205

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 2 residues within 4Å: Chain A: I.234, Y.262 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ansideri, F. et al., Structural Optimization of a Pyridinylimidazole Scaffold: Shifting the Selectivity from p38 alpha Mitogen-Activated Protein Kinase to c-Jun N-Terminal Kinase 3. ACS Omega (2018)

Release Date

2018-08-08

Peptides

Mitogen-activated protein kinase 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 10

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