- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 8 residues within 4Å:- Chain A: T.114, Y.116, Y.127, E.164, G.167, I.168, I.169
- Chain B: I.168
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.127, A:Y.127, A:E.164, A:G.167, A:I.169
EDO.7: 6 residues within 4Å:- Chain A: Y.116, P.131, I.168
- Chain B: Y.116, P.131, I.168
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.116, A:Y.116
EDO.8: 5 residues within 4Å:- Chain A: N.70, A.73, Y.74, T.121, T.122
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.70, A:T.122
EDO.9: 2 residues within 4Å:- Chain A: R.173, F.188
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.173
EDO.12: 6 residues within 4Å:- Chain B: Y.116, Y.127, E.164, G.167, I.168, I.169
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.127, B:E.164, B:G.167, B:I.169
EDO.13: 6 residues within 4Å:- Chain A: E.164, N.165, G.167
- Chain B: R.113, T.114, E.164
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobor, F. et al., A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets. Nat Commun (2018)
- Release Date
- 2018-03-07
- Peptides
- Syncrip, isoform K: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hobor, F. et al., A cryptic RNA-binding domain mediates Syncrip recognition and exosomal partitioning of miRNA targets. Nat Commun (2018)
- Release Date
- 2018-03-07
- Peptides
- Syncrip, isoform K: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B