SMTL ID : 6eu5.1

Leishmania major N-myristoyltransferase with bound myristoyl-CoA and inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 33 residues within 4Å: Chain A: H.29, A.30, F.31, W.32, N.96, Y.97, V.98, I.183, F.185, L.186, C.187, V.188, R.193, E.194, K.195, R.196, L.197, A.198, P.199, I.202, T.206, V.209, N.210, W.215, Q.216, A.217, Y.219, T.220, A.221, V.223, L.225, Y.421 Ligands: BXN.2 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:Y.97, A:V.98, A:I.183, A:L.186, A:L.186, A:V.188, A:I.202, A:V.209, A:A.217, A:Y.219, A:Y.219, A:Y.219, A:Y.421, A:Y.421 Hydrogen bonds: A:A.30, A:F.31, A:W.32, A:F.185, A:L.186, A:L.186, A:V.188, A:R.193, A:R.193, A:E.194, A:R.196, A:L.197, A:A.198 Water bridges: A:K.195, A:K.195 Salt bridges: A:H.29, A:R.196, A:R.196

1 x BXN: 4-[3-[(8~{a}~{R})-3,4,6,7,8,8~{a}-hexahydro-1~{H}-pyrrolo[1,2-a]pyrazin-2-yl]propyl]-2,6-bis(chloranyl)-~{N}-methyl-~{N}-(1,3,5-trimethylpyrazol-4-yl)benzenesulfonamide(Non-covalent)

BXN.2: 22 residues within 4Å: Chain A: Y.97, V.98, E.99, D.100, F.105, R.106, F.107, Y.109, T.220, G.222, Y.234, H.236, F.249, S.347, L.358, Y.362, N.393, G.414, H.415, M.437, L.438 Ligands: MYA.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.100, A:Y.234, A:F.249, A:L.358 Hydrogen bonds: A:Y.97, A:S.347, A:N.393 Water bridges: A:N.184, A:D.413 Halogen bonds: A:Y.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kersten, C. et al., How To Design Selective Ligands for Highly Conserved Binding Sites: A Case Study UsingN-Myristoyltransferases as a Model System. J.Med.Chem. (2019)

Release Date

2019-02-06

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

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