- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4LU: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: N.168, H.191, E.233
- Ligands: 4LU.1, K.3, FZZ.5
5 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: A:H.191, A:E.233, 4LU.1, H2O.3, H2O.8
MN.7: 6 residues within 4Å:- Chain B: N.168, H.191, E.233
- Ligands: 4LU.6, K.8, FZZ.10
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: B:H.191, B:E.233, 4LU.6, H2O.31, H2O.37
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 8 residues within 4Å:- Chain A: W.169, A.222, S.223, M.225, E.233
- Ligands: 4LU.1, MN.2, FZZ.5
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:A.222, A:M.225, A:E.233, 4LU.1
K.4: 4 residues within 4Å:- Chain A: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:R.421, A:D.427, A:D.459, A:L.461, H2O.13
K.8: 8 residues within 4Å:- Chain B: W.169, A.222, S.223, M.225, E.233
- Ligands: 4LU.6, MN.7, FZZ.10
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Ligand interactions- Metal complexes: B:A.222, B:M.225, B:E.233, 4LU.6
K.9: 4 residues within 4Å:- Chain B: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:R.421, B:D.427, B:D.459, B:L.461, H2O.41
- 2 x FZZ: 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol(Covalent)
FZZ.5: 23 residues within 4Å:- Chain A: T.153, N.168, W.169, S.170, I.171, A.172, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, T.323, I.327, K.391, T.395, F.437, L.439
- Ligands: 4LU.1, MN.2, K.3
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:I.171, A:I.171, A:I.171, A:T.323, A:I.327, A:I.327
- Hydrogen bonds: A:N.168, A:I.171, A:I.171, A:Q.190, A:H.191
- Water bridges: A:S.170, A:I.192, A:I.192, A:I.227, A:I.227, A:K.391
- Salt bridges: A:H.191, A:K.391
FZZ.10: 23 residues within 4Å:- Chain B: T.153, N.168, W.169, S.170, I.171, A.172, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, T.323, I.327, K.391, T.395, F.437, L.439
- Ligands: 4LU.6, MN.7, K.8
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:I.171, B:I.171, B:I.171, B:T.323, B:I.327, B:I.327
- Hydrogen bonds: B:N.168, B:I.171, B:I.171, B:Q.190, B:H.191
- Water bridges: B:S.170, B:I.192, B:I.192, B:I.227, B:I.227, B:K.391
- Salt bridges: B:H.191, B:K.391
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bailey, S.S. et al., The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem. (2018)
- Release Date
- 2017-12-20
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4LU: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x FZZ: 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bailey, S.S. et al., The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem. (2018)
- Release Date
- 2017-12-20
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A