SMTL ID : 6eye.1

Crystal structure of murine neuroglobin under 150 bar krypton

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.21, S.22, P.23, L.24, E.25, R.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.24, A:E.25 Salt bridges: A:R.69

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 20 residues within 4Å: Chain A: L.41, L.44, F.45, Y.47, H.67, K.70, V.71, V.74, Y.91, L.95, K.98, H.99, V.104, F.109, V.112 Ligands: KR.5, KR.7, KR.8, KR.12, KR.13 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:L.41, A:L.44, A:F.45, A:F.45, A:Y.47, A:K.70, A:K.70, A:V.71, A:V.71, A:V.74, A:V.74, A:V.74, A:L.95, A:K.98, A:V.104, A:V.104, A:F.109, A:V.112, A:V.112 Hydrogen bonds: A:Y.47 Water bridges: A:K.70 Salt bridges: A:K.70, A:K.98 pi-Stacking: A:H.67, A:H.99 Metal complexes: A:H.67, A:H.99

15 x KR: KRYPTON(Non-covalent)(Covalent)

KR.3: 6 residues within 4Å: Chain A: F.31, A.32, F.35, S.58, L.59 Ligands: KR.15 No protein-ligand interaction detected (PLIP) KR.4: 3 residues within 4Å: Chain A: W.136, L.139 Ligands: KR.7 No protein-ligand interaction detected (PLIP) KR.5: 4 residues within 4Å: Chain A: I.75, V.112 Ligands: HEM.2, KR.7 No protein-ligand interaction detected (PLIP) KR.6: 5 residues within 4Å: Chain A: G.113, L.116, L.117, W.136, Y.140 No protein-ligand interaction detected (PLIP) KR.7: 5 residues within 4Å: Chain A: I.75, V.143 Ligands: HEM.2, KR.4, KR.5 No protein-ligand interaction detected (PLIP) KR.8: 4 residues within 4Å: Chain A: L.30, F.31, V.112 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) KR.9: 3 residues within 4Å: Chain A: S.94, L.95, K.98 No protein-ligand interaction detected (PLIP) KR.10: 2 residues within 4Å: Chain A: Y.91 Ligands: KR.11 No protein-ligand interaction detected (PLIP) KR.11: 4 residues within 4Å: Chain A: V.74, A.77, Y.91 Ligands: KR.10 No protein-ligand interaction detected (PLIP) KR.12: 4 residues within 4Å: Chain A: K.98, H.99, V.102 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) KR.13: 3 residues within 4Å: Chain A: H.99, F.109 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) KR.14: 5 residues within 4Å: Chain A: L.85, E.89, L.92, A.142, V.143 No protein-ligand interaction detected (PLIP) KR.15: 3 residues within 4Å: Chain A: P.55, L.59 Ligands: KR.3 No protein-ligand interaction detected (PLIP) KR.16: 3 residues within 4Å: Chain A: M.72, L.73, D.76 No protein-ligand interaction detected (PLIP) KR.17: 6 residues within 4Å: Chain A: G.27, L.30, F.31, I.68, V.71, M.72 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colloc'h, N. et al., Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas under Pressure. Biophys. J. (2017)

Release Date

2017-11-29

Peptides

Neuroglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuroglobin

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