SMTL ID : 6f6q.1

Carboxypeptidase T mutant L254N with Sulphamoil Arginine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 Ligands: 0X9.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204

5 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.8, H2O.11 CA.3: 5 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 Ligands: CA.10 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.4 CA.4: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:Y.5, A:D.291, H2O.5, H2O.11, H2O.12 CA.5: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.1, H2O.8 CA.10: 5 residues within 4Å: Chain A: D.51, E.57, E.59, N.101 Ligands: CA.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:E.59, A:N.101, H2O.3, H2O.10

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: F.174, R.183, N.187, W.264, Q.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:R.183, A:Q.268 SO4.7: 4 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20 Salt bridges: A:K.32 SO4.9: 3 residues within 4Å: Chain A: S.138, S.139, Y.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.139, A:S.139, A:Y.140 Water bridges: A:G.137, A:S.138

1 x 0X9: N~2~-sulfamoyl-L-arginine(Non-covalent)

0X9.8: 16 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, N.254, Y.255, T.257, T.275, E.277 Ligands: ZN.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.275 Hydrogen bonds: A:R.129, A:R.129, A:N.146, A:Y.255, A:Y.255, A:Y.255, A:Y.255, A:T.257, A:E.277, A:E.277 Water bridges: A:Y.206, A:N.254, A:E.277 Salt bridges: A:H.69, A:R.129, A:R.147, A:H.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Carboxypeptidase T mutant L254N with Sulphamoil Arginine. To Be Published

Release Date

2018-08-15

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

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