SMTL ID : 6f73.1 (1 other biounit)

Crystal structure of VAO-type flavoprotein MtVAO615 at pH 5.0 from Myceliophthora thermophila C1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.102, N.105, N.122, A.567 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.567

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 34 residues within 4Å: Chain A: S.87, I.152, K.153, N.154, T.155, G.156, H.157, D.158, Y.159, K.162, S.163, M.173, A.199, T.221, C.222, V.225, G.226, G.229, G.230, Y.231, Q.233, G.236, H.237, G.283, G.284, A.287, V.288, V.289, A.407, Y.409, Y.516, N.518, E.519, V.554 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:H.157, A:Y.159, A:V.225, A:A.407, A:Y.409 Hydrogen bonds: A:N.154, A:N.154, A:T.155, A:T.155, A:G.156, A:H.157, A:D.158, A:K.162, A:S.163, A:S.163, A:T.221, A:C.222, A:G.226, A:G.226, A:G.230, A:Y.231, A:Q.233, A:H.237, A:H.237, A:G.284, A:V.289, A:V.289, A:N.518, A:E.519 Water bridges: A:I.152, A:Y.159

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.47, G.52, L.54, A.56 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.47, A:L.54 Water bridges: A:G.52, A:A.56 NAG.4: 4 residues within 4Å: Chain A: H.53, I.55, N.129, N.175 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.55 Hydrogen bonds: A:N.129 Water bridges: A:N.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrari, A.R. et al., Characterization of Two VAO-Type Flavoprotein Oxidases from Myceliophthora thermophila. Molecules (2018)

Release Date

2018-01-10

Peptides

MtVAO615: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MtVAO615

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