SMTL ID : 6f74.2 (3 other biounits)

Crystal structure of VAO-type flavoprotein MtVAO713 from Myceliophthora thermophila C1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.103, T.105, I.121, R.512, R.515, P.591, D.592 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 33 residues within 4Å: Chain A: Q.88, N.99, Y.100, T.154, S.155, S.156, T.157, G.158, H.159, D.160, L.161, R.164, S.165, L.175, G.229, G.230, S.231, P.234, G.235, G.238, G.239, W.240, G.245, H.246, P.292, G.295, I.296, V.297, V.429, Y.540, N.542, E.543, C.578 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:N.99, A:Y.100, A:H.159, A:P.234, A:V.429 Hydrogen bonds: A:S.155, A:S.156, A:S.156, A:T.157, A:T.157, A:G.158, A:H.159, A:D.160, A:R.164, A:R.164, A:S.165, A:G.230, A:S.231, A:G.235, A:G.239, A:W.240, A:H.246, A:H.246, A:V.297, A:V.297, A:Y.540, A:Y.540, A:N.542 Water bridges: A:T.154, A:T.154, A:L.161, A:G.238, A:G.238, A:G.293

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: I.58, N.131, S.133, W.174, S.177 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.174 Hydrogen bonds: A:N.131, A:S.133, A:S.177 Water bridges: A:S.177

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: D.481, K.482, D.484, T.485, S.487, L.489, R.494 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.487, A:L.489, A:L.489, A:R.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrari, A.R. et al., Characterization of Two VAO-Type Flavoprotein Oxidases from Myceliophthora thermophila. Molecules (2018)

Release Date

2018-01-10

Peptides

Alcohol oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alcohol oxidase

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