SMTL ID : 6fam.1

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-2-aminodeoxymannojirimycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: K.212, S.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.219, A:S.219 Salt bridges: A:K.212

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 9 residues within 4Å: Chain A: W.53, H.65, H.68, I.299, R.300, E.338, H.340, E.341 Ligands: G63.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.300, A:R.300, A:E.341 Water bridges: A:H.65, A:H.65, A:H.68, A:W.131

1 x G63: mannose-alpha-1,3-2-aminodeoxymannojirimycin(Non-covalent)

G63.3: 10 residues within 4Å: Chain A: Y.51, W.53, W.131, H.159, E.161, Y.200, Y.257, E.338, E.341 Ligands: MAN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandes, P.Z. et al., Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-alpha-1,2-Mannanases. Chemistry (2018)

Release Date

2018-03-21

Peptides

Glycosyl hydrolase family 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 71

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