SMTL ID : 6far.1

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-mannoimidazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 9 residues within 4Å: Chain A: W.53, H.65, H.68, I.299, R.300, E.338, H.340, E.341 Ligands: MVL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.65, A:R.300, A:R.300, A:E.341 Water bridges: A:H.65

1 x MVL: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL(Non-covalent)

MVL.2: 10 residues within 4Å: Chain A: Y.51, W.53, W.131, H.159, E.161, Y.200, Y.257, E.338, E.341 Ligands: MAN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandes, P.Z. et al., Exploration of Strategies for Mechanism-Based Inhibitor Design for Family GH99 endo-alpha-1,2-Mannanases. Chemistry (2018)

Release Date

2018-03-21

Peptides

Glycosyl hydrolase family 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 71

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