SMTL ID : 6fb3.4 (3 other biounits)

Teneurin 2 Partial Extracellular Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: L.1395, N.1413, S.1415, N.1416, M.1461, I.1462, S.1477, N.1478, D.1480, F.1481, Q.1482 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.1482, A:Q.1482

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: Y.680, Y.689, N.692, M.705, D.706 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: E.830, Q.845, C.847, N.849, T.851, R.853, H.865 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.853 NAG-NAG.4: 7 residues within 4Å: Chain A: N.968, V.969, S.970, G.979, L.980, Q.981, R.988 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.988, A:R.988 NAG-NAG.5: 4 residues within 4Å: Chain A: N.1069, L.1088, E.1690, G.1691 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 6 residues within 4Å: Chain A: R.1716, G.1722, N.1724, Q.1747, Y.1748, S.1749 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 5 residues within 4Å: Chain A: N.24, S.26, Y.35, I.37, E.59 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.35 Hydrogen bonds: A:S.26 NAG.8: 6 residues within 4Å: Chain A: D.779, T.787, N.788, S.798, H.800, K.1653 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.800 NAG.9: 4 residues within 4Å: Chain A: H.865, R.881, N.883, S.894 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.881, A:R.881, A:S.894 NAG.10: 1 residues within 4Å: Chain A: N.1273 No protein-ligand interaction detected (PLIP) NAG.11: 4 residues within 4Å: Chain A: G.306, L.307, S.341, N.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, V.A. et al., Structures of Teneurin adhesion receptors reveal an ancient fold for cell-cell interaction. Nat Commun (2018)

Release Date

2018-03-28

Peptides

Teneurin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Teneurin-2

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