SMTL ID : 6fdq.1 (1 other biounit)

Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 2UQ: N-benzyl-2-[(Z)-iminomethyl]pyrimidine-5-carboxamide(Covalent)

2UQ.1: 14 residues within 4Å: Chain A: D.32, W.112, M.127, L.130, A.131, S.135, V.136, S.139, H.140, W.141, G.207, S.208, S.209, C.210 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.32, A:A.131 Hydrogen bonds: A:S.135, A:S.139, A:G.207, A:C.210 Water bridges: A:G.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramirez, Y.A. et al., Structural Basis of Substrate Recognition and Covalent Inhibition of Cdu1 from Chlamydia trachomatis. ChemMedChem (2018)

Release Date

2018-08-15

Peptides

Deubiquitinase and deneddylase Dub1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deubiquitinase and deneddylase Dub1

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