SMTL ID : 6fev.1

Phosphotriesterase PTE_A53_4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 10 residues within 4Å: Chain A: H.29, H.31, V.75, W.105, K.143, H.175, H.204 Ligands: ZN.2, ZN.3, E5N.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.143 FMT.5: 10 residues within 4Å: Chain B: H.29, H.31, V.75, W.105, K.143, H.175, H.204 Ligands: ZN.6, ZN.7, E5N.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.143

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain A: H.29, H.31, V.75, D.275 Ligands: FMT.1, ZN.3, E5N.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.29, A:H.31, A:D.275 ZN.3: 6 residues within 4Å: Chain A: W.105, H.175, H.204 Ligands: FMT.1, ZN.2, E5N.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.175, A:H.204 ZN.6: 6 residues within 4Å: Chain B: H.29, H.31, D.275 Ligands: FMT.5, ZN.7, E5N.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.29, B:H.31, B:D.275 ZN.7: 6 residues within 4Å: Chain B: W.105, H.175, H.204 Ligands: FMT.5, ZN.6, E5N.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.175, B:H.204

2 x E5N: (2~{R})-2-methylpentanedioic acid(Non-covalent)

E5N.4: 12 residues within 4Å: Chain A: H.29, H.31, W.105, H.175, H.204, H.231, D.275, L.277, F.280 Ligands: FMT.1, ZN.2, ZN.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.105, A:L.277 Salt bridges: A:H.29, A:H.31, A:K.143, A:H.175, A:H.204, A:H.231 E5N.8: 13 residues within 4Å: Chain B: H.29, H.31, W.105, H.175, H.204, H.231, L.245, D.275, L.277, F.280 Ligands: FMT.5, ZN.6, ZN.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.105, B:L.277 Hydrogen bonds: B:D.275 Salt bridges: B:H.29, B:H.31, B:K.143, B:H.175, B:H.204, B:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., PhosphotriesterasePTE_A53_4. To Be Published

Release Date

2019-01-30

Peptides

Parathion hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Parathion hydrolase

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