SMTL ID : 6ffw.1

Phosphotriesterase PTE_A53_5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 10 residues within 4Å: Chain A: H.29, H.31, V.75, W.105, K.143, H.175, H.204 Ligands: ZN.2, ZN.3, D6K.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.143 FMT.10: 9 residues within 4Å: Chain B: H.29, H.31, V.75, W.105, K.143, H.175, H.204 Ligands: ZN.11, ZN.12 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.143

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.29, H.31, D.275 Ligands: FMT.1, ZN.3, D6K.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.29, A:H.31, A:D.275 ZN.3: 6 residues within 4Å: Chain A: W.105, H.175, H.204 Ligands: FMT.1, ZN.2, D6K.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.175, A:H.204, H2O.1 ZN.11: 5 residues within 4Å: Chain B: H.29, H.31, D.275 Ligands: FMT.10, ZN.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.29, B:H.31, B:D.275 ZN.12: 4 residues within 4Å: Chain B: H.175, H.204 Ligands: FMT.10, ZN.11 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.175, B:H.204, H2O.22

1 x D6K: (4~{S},6~{R})-2,2,6-trimethyl-1,3-dioxan-4-ol(Non-covalent)

D6K.4: 14 residues within 4Å: Chain A: H.29, H.31, G.34, W.105, H.204, H.231, L.245, D.275, L.277, F.280 Ligands: FMT.1, ZN.2, ZN.3, TRS.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.245, A:L.277, A:L.277, A:F.280 Salt bridges: A:H.31, A:H.204

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 5 residues within 4Å: Chain A: H.204, D.207, H.231, L.245 Ligands: D6K.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.207, A:H.231, A:R.254, A:D.275 Water bridges: A:D.207, A:R.254

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: E.155, R.159, I.189 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.159 EDO.7: 4 residues within 4Å: Chain A: E.155, L.156, R.159 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.155, A:R.159, A:R.159 EDO.8: 3 residues within 4Å: Chain B: A.51, V.54, E.89 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.89 EDO.9: 3 residues within 4Å: Chain B: P.316, E.318, T.319 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.319, B:T.319 Water bridges: B:E.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., PhosphotriesterasePTE_A53_5. To Be Published

Release Date

2019-03-13

Peptides

Parathion hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Parathion hydrolase

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