SMTL ID : 6flc.1 (1 other biounit)

2C8 Fab bound to EDIII of DenV 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: L.46, Y.49, A.55, D.56 Chain B: R.100, K.102, D.109, Y.110 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.49, A:D.56, B:R.100, B:D.109, B:D.109 GOL.2: 5 residues within 4Å: Chain B: S.128, V.129, V.214, K.216 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.129, B:V.129, B:K.216 GOL.3: 5 residues within 4Å: Chain B: A.126, P.127, T.212, V.214 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.127, B:T.212, B:T.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renner, M. et al., Characterization of a potent and highly unusual minimally enhancing antibody directed against dengue virus. Nat. Immunol. (2018)

Release Date

2018-10-24

Peptides

Light chain of 2C8 Fab: A
Heavy chain of 2C8 Fab: B
Domain III of Dengue virus 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
I

Light chain of 2C8 Fab

Heavy chain of 2C8 Fab

Domain III of Dengue virus 2

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