SMTL ID : 6fmt.1

IMISX-EP of Hg-BacA Soaking SAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 2 residues within 4Å: Chain A: C.171, C.174 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.171, A:C.171, A:C.174

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 5 residues within 4Å: Chain A: L.28, L.257, I.261, F.266, Y.269 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.28, A:I.261, A:F.266, A:Y.269, A:Y.269 OLC.3: 6 residues within 4Å: Chain A: V.137, L.140, A.144, C.147, L.148, K.149 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.137, A:L.140, A:A.144 Hydrogen bonds: A:L.148 OLC.4: 5 residues within 4Å: Chain A: M.214, A.218, L.221, Y.222, W.225 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.218, A:L.221 Hydrogen bonds: A:W.225 OLC.5: 6 residues within 4Å: Chain A: I.143, E.146, C.147, I.264, I.268, F.271 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.143, A:I.143, A:I.268, A:F.271

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 3 residues within 4Å: Chain A: R.154, R.164, M.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.164, A:Q.165, A:M.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.Y. et al., In situ serial crystallography for rapid de novo membrane protein structure determination. Commun Biol (2018)

Release Date

2018-09-05

Peptides

Undecaprenyl-diphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Undecaprenyl-diphosphatase

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