SMTL ID : 6fqy.1

Plasmodium falciparum 6-phosphogluconate dehydrogenase in its apo form, in complex with its cofactor NADP+ and in complex with its substrate 6-phosphogluconate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 9 residues within 4Å: Chain A: G.8, A.10, N.31, R.32, T.33, R.36, I.74, K.75, A.79 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:L.9, A:N.31, A:R.32, A:T.33, A:K.75 Water bridges: A:M.12 Salt bridges: A:R.32, A:R.36, A:R.36, A:K.75 pi-Cation interactions: A:R.32 NAP.4: 8 residues within 4Å: Chain B: A.10, V.11, N.31, R.32, T.33, R.36, K.75, A.79 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.11, B:N.31, B:R.32, B:T.33, B:K.75 Salt bridges: B:R.32, B:R.36, B:R.36 pi-Cation interactions: B:R.32, B:R.32

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: N.102, S.128, G.129, K.182, N.186, I.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.129, A:K.182, A:N.186 EDO.3: 6 residues within 4Å: Chain A: D.192, L.226, S.228, L.230, I.231, K.331 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.192, A:L.226, A:S.228, A:K.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haeussler, K. et al., Characterization of Plasmodium falciparum 6-Phosphogluconate Dehydrogenase as an Antimalarial Drug Target. J. Mol. Biol. (2018)

Release Date

2018-08-22

Peptides

6-phosphogluconate dehydrogenase, decarboxylating: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-phosphogluconate dehydrogenase, decarboxylating

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