SMTL ID : 6fuk.1

Crystal structure of UTX complexed with 5-carboxy-8-hydroxyquinoline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.276, E.278, H.356 Ligands: 8XQ.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.276, A:E.278, H2O.2, H2O.8

1 x 8XQ: 8-hydroxyquinoline-5-carboxylic acid(Non-covalent)

8XQ.2: 12 residues within 4Å: Chain A: F.214, Y.265, K.267, T.273, H.276, E.278, N.286, W.296, H.356, V.358, N.366 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.265, A:T.273, A:W.296, A:V.358 Hydrogen bonds: A:T.273, A:N.286 Water bridges: A:T.273, A:S.284, A:S.284 Salt bridges: A:K.267

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.461, C.464, C.488, C.491 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.461, A:C.464, A:C.488, A:C.491

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: R.452, T.453, K.454, E.455, E.456 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.455, A:E.456 Water bridges: A:R.452, A:R.452 Salt bridges: A:R.452 SO4.5: 4 residues within 4Å: Chain A: F.82, P.237, A.238, R.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.238 Water bridges: A:F.239 Salt bridges: A:R.241

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 1 residues within 4Å: Chain A: R.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157 Water bridges: A:R.157 PEG.7: 4 residues within 4Å: Chain A: A.138, E.295, I.341, I.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.295 Water bridges: A:Q.359

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.8: 6 residues within 4Å: Chain A: R.241, V.243, S.244, A.245, S.250, H.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.245 Water bridges: A:R.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esposito, C. et al., In Silico Identification of JMJD3 Demethylase Inhibitors. J Chem Inf Model (2018)

Release Date

2018-10-10

Peptides

Lysine-specific demethylase 6A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 6A

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