SMTL ID : 6fwh.1

Acanthamoeba IGPD in complex with R-C348 to 1.7A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-24-mer

Ligands

48 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.40, H.162, E.166 Chain F: H.67 Ligands: 5LD.3 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F Metal complexes: A:H.40, A:H.162, A:E.166, F:H.67 MN.2: 5 residues within 4Å: Chain A: H.66, E.70, H.138 Chain B: H.163 Ligands: 5LD.6 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.66, A:E.70, A:H.138, B:H.163, H2O.7 MN.4: 5 residues within 4Å: Chain A: H.67 Chain B: H.40, H.162, E.166 Ligands: 5LD.6 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Metal complexes: A:H.67, B:H.40, B:H.162, B:E.166 MN.5: 5 residues within 4Å: Chain B: H.66, E.70, H.138 Chain G: H.163 Ligands: 5LD.7 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: B:H.66, B:E.70, B:H.138, G:H.163, H2O.30 MN.8: 5 residues within 4Å: Chain C: H.40, H.162, E.166 Chain Q: H.67 Ligands: 5LD.11 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain Q Metal complexes: C:H.40, C:H.162, C:E.166, Q:H.67 MN.9: 5 residues within 4Å: Chain C: H.163 Chain Q: H.66, E.70, H.138 Ligands: 5LD.11 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: Q:H.66, Q:E.70, Q:H.138, C:H.163, H2O.80 MN.10: 5 residues within 4Å: Chain C: H.66, E.70, H.138 Chain J: H.163 Ligands: 5LD.28 5 PLIP interactions: 1 interactions with chain J, 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: J:H.163, C:H.66, C:E.70, C:H.138, H2O.45 MN.12: 5 residues within 4Å: Chain D: H.40, H.162, E.166 Chain L: H.67 Ligands: 5LD.13 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain L Metal complexes: D:H.40, D:H.162, D:E.166, L:H.67 MN.14: 5 residues within 4Å: Chain E: H.40, H.162, E.166 Chain K: H.67 Ligands: 5LD.15 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain K Metal complexes: E:H.40, E:H.162, E:E.166, K:H.67 MN.16: 5 residues within 4Å: Chain A: H.163 Chain F: H.66, E.70, H.138 Ligands: 5LD.3 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: A:H.163, F:H.66, F:E.70, F:H.138, H2O.25 MN.17: 5 residues within 4Å: Chain F: H.40, H.162, E.166 Chain G: H.67 Ligands: 5LD.18 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain G Metal complexes: F:H.40, F:H.162, F:E.166, G:H.67 MN.19: 5 residues within 4Å: Chain F: H.163 Chain G: H.66, E.70, H.138 Ligands: 5LD.18 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: G:H.66, G:E.70, G:H.138, F:H.163, H2O.25 MN.20: 5 residues within 4Å: Chain B: H.67 Chain G: H.40, H.162, E.166 Ligands: 5LD.7 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain B Metal complexes: G:H.40, G:H.162, G:E.166, B:H.67 MN.21: 5 residues within 4Å: Chain H: H.40, H.162, E.166 Chain P: H.67 Ligands: 5LD.24 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain P Metal complexes: H:H.40, H:H.162, H:E.166, P:H.67 MN.22: 5 residues within 4Å: Chain H: H.163 Chain P: H.66, E.70, H.138 Ligands: 5LD.24 5 PLIP interactions: 3 interactions with chain P, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: P:H.66, P:E.70, P:H.138, H:H.163, H2O.36 MN.23: 5 residues within 4Å: Chain H: H.66, E.70, H.138 Chain I: H.163 Ligands: 5LD.26 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: H:H.66, H:E.70, H:H.138, I:H.163, H2O.36 MN.25: 5 residues within 4Å: Chain H: H.67 Chain I: H.40, H.162, E.166 Ligands: 5LD.26 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain I Metal complexes: H:H.67, I:H.40, I:H.162, I:E.166 MN.27: 5 residues within 4Å: Chain C: H.67 Chain J: H.40, H.162, E.166 Ligands: 5LD.28 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain C Metal complexes: J:H.40, J:H.162, J:E.166, C:H.67 MN.29: 5 residues within 4Å: Chain E: H.163 Chain K: H.66, E.70, H.138 Ligands: 5LD.15 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: K:H.66, K:E.70, K:H.138, E:H.163, H2O.50 MN.30: 5 residues within 4Å: Chain K: H.40, H.162, E.166 Chain V: H.67 Ligands: 5LD.32 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain V Metal complexes: K:H.40, K:H.162, K:E.166, V:H.67 MN.31: 5 residues within 4Å: Chain K: H.163 Chain V: H.66, E.70, H.138 Ligands: 5LD.32 5 PLIP interactions: 3 interactions with chain V, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: V:H.66, V:E.70, V:H.138, K:H.163, H2O.103 MN.33: 5 residues within 4Å: Chain D: H.163 Chain L: H.66, E.70, H.138 Ligands: 5LD.13 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: L:H.66, L:E.70, L:H.138, D:H.163, H2O.18 MN.34: 5 residues within 4Å: Chain L: H.40, H.162, E.166 Chain U: H.67 Ligands: 5LD.36 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain U Metal complexes: L:H.40, L:H.162, L:E.166, U:H.67 MN.35: 5 residues within 4Å: Chain L: H.163 Chain U: H.66, E.70, H.138 Ligands: 5LD.36 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: U:H.66, U:E.70, U:H.138, L:H.163, H2O.98 MN.38: 5 residues within 4Å: Chain M: H.40, H.162, E.166 Chain R: H.67 Ligands: 5LD.40 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain R Metal complexes: M:H.40, M:H.162, M:E.166, R:H.67 MN.39: 5 residues within 4Å: Chain M: H.66, E.70, H.138 Chain N: H.163 Ligands: 5LD.43 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: M:H.66, M:E.70, M:H.138, N:H.163, H2O.65 MN.41: 5 residues within 4Å: Chain M: H.67 Chain N: H.40, H.162, E.166 Ligands: 5LD.43 4 PLIP interactions: 3 interactions with chain N, 1 interactions with chain M Metal complexes: N:H.40, N:H.162, N:E.166, M:H.67 MN.42: 5 residues within 4Å: Chain N: H.66, E.70, H.138 Chain S: H.163 Ligands: 5LD.44 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: N:H.66, N:E.70, N:H.138, S:H.163, H2O.89 MN.45: 5 residues within 4Å: Chain E: H.67 Chain O: H.40, H.162, E.166 Ligands: 5LD.48 4 PLIP interactions: 3 interactions with chain O, 1 interactions with chain E Metal complexes: O:H.40, O:H.162, O:E.166, E:H.67 MN.46: 5 residues within 4Å: Chain E: H.66, E.70, H.138 Chain O: H.163 Ligands: 5LD.48 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: E:H.66, E:E.70, E:H.138, O:H.163, H2O.21 MN.47: 5 residues within 4Å: Chain O: H.66, E.70, H.138 Chain V: H.163 Ligands: 5LD.65 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: O:H.66, O:E.70, O:H.138, V:H.163, H2O.103 MN.49: 5 residues within 4Å: Chain P: H.40, H.162, E.166 Chain X: H.67 Ligands: 5LD.50 4 PLIP interactions: 3 interactions with chain P, 1 interactions with chain X Metal complexes: P:H.40, P:H.162, P:E.166, X:H.67 MN.51: 5 residues within 4Å: Chain Q: H.40, H.162, E.166 Chain W: H.67 Ligands: 5LD.52 4 PLIP interactions: 1 interactions with chain W, 3 interactions with chain Q Metal complexes: W:H.67, Q:H.40, Q:H.162, Q:E.166 MN.53: 5 residues within 4Å: Chain M: H.163 Chain R: H.66, E.70, H.138 Ligands: 5LD.40 5 PLIP interactions: 1 interactions with chain M, 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: M:H.163, R:H.66, R:E.70, R:H.138, H2O.84 MN.54: 5 residues within 4Å: Chain R: H.40, H.162, E.166 Chain S: H.67 Ligands: 5LD.55 4 PLIP interactions: 1 interactions with chain S, 3 interactions with chain R Metal complexes: S:H.67, R:H.40, R:H.162, R:E.166 MN.56: 5 residues within 4Å: Chain R: H.163 Chain S: H.66, E.70, H.138 Ligands: 5LD.55 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: S:H.66, S:E.70, S:H.138, R:H.163, H2O.84 MN.57: 5 residues within 4Å: Chain N: H.67 Chain S: H.40, H.162, E.166 Ligands: 5LD.44 4 PLIP interactions: 1 interactions with chain N, 3 interactions with chain S Metal complexes: N:H.67, S:H.40, S:H.162, S:E.166 MN.58: 5 residues within 4Å: Chain D: H.67 Chain T: H.40, H.162, E.166 Ligands: 5LD.61 4 PLIP interactions: 3 interactions with chain T, 1 interactions with chain D Metal complexes: T:H.40, T:H.162, T:E.166, D:H.67 MN.59: 5 residues within 4Å: Chain D: H.66, E.70, H.138 Chain T: H.163 Ligands: 5LD.61 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: D:H.66, D:E.70, D:H.138, T:H.163, H2O.94 MN.60: 5 residues within 4Å: Chain T: H.66, E.70, H.138 Chain U: H.163 Ligands: 5LD.63 5 PLIP interactions: 1 interactions with chain U, 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: U:H.163, T:H.66, T:E.70, T:H.138, H2O.94 MN.62: 5 residues within 4Å: Chain T: H.67 Chain U: H.40, H.162, E.166 Ligands: 5LD.63 4 PLIP interactions: 3 interactions with chain U, 1 interactions with chain T Metal complexes: U:H.40, U:H.162, U:E.166, T:H.67 MN.64: 5 residues within 4Å: Chain O: H.67 Chain V: H.40, H.162, E.166 Ligands: 5LD.65 4 PLIP interactions: 3 interactions with chain V, 1 interactions with chain O Metal complexes: V:H.40, V:H.162, V:E.166, O:H.67 MN.66: 5 residues within 4Å: Chain Q: H.163 Chain W: H.66, E.70, H.138 Ligands: 5LD.52 5 PLIP interactions: 3 interactions with chain W, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: W:H.66, W:E.70, W:H.138, Q:H.163, H2O.109 MN.67: 5 residues within 4Å: Chain J: H.67 Chain W: H.40, H.162, E.166 Ligands: 5LD.69 4 PLIP interactions: 1 interactions with chain J, 3 interactions with chain W Metal complexes: J:H.67, W:H.40, W:H.162, W:E.166 MN.68: 5 residues within 4Å: Chain J: H.66, E.70, H.138 Chain W: H.163 Ligands: 5LD.69 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: J:H.66, J:E.70, J:H.138, W:H.163, H2O.45 MN.70: 5 residues within 4Å: Chain P: H.163 Chain X: H.66, E.70, H.138 Ligands: 5LD.50 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: X:H.66, X:E.70, X:H.138, P:H.163, H2O.76 MN.71: 5 residues within 4Å: Chain I: H.67 Chain X: H.40, H.162, E.166 Ligands: 5LD.73 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain I Metal complexes: X:H.40, X:H.162, X:E.166, I:H.67 MN.72: 5 residues within 4Å: Chain I: H.66, E.70, H.138 Chain X: H.163 Ligands: 5LD.73 5 PLIP interactions: 1 interactions with chain X, 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: X:H.163, I:H.66, I:E.70, I:H.138, H2O.40

24 x 5LD: [(2R)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]phosphonic acid(Non-covalent)

5LD.3: 17 residues within 4Å: Chain A: H.40, L.100, H.162, H.163, E.166, K.170 Chain C: R.92, R.114, S.191, T.192, K.193 Chain F: E.14, H.66, H.67, E.70 Ligands: MN.1, MN.16 10 PLIP interactions: 1 interactions with chain A, 9 interactions with chain C Hydrogen bonds: A:K.170, C:R.92, C:R.92, C:R.114, C:R.114, C:S.191, C:T.192 Water bridges: C:Y.93, C:D.110, C:T.192 5LD.6: 17 residues within 4Å: Chain A: E.14, H.66, H.67, E.70 Chain B: H.40, L.100, H.162, H.163, E.166, K.170 Chain K: R.92, R.114, S.191, T.192, K.193 Ligands: MN.2, MN.4 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain K Hydrogen bonds: B:K.170, K:R.92, K:R.92, K:R.114, K:R.114, K:S.191, K:T.192 Water bridges: K:Y.93, K:D.110 5LD.7: 17 residues within 4Å: Chain B: E.14, H.66, H.67, E.70 Chain G: H.40, L.100, H.162, H.163, E.166, K.170 Chain L: R.92, R.114, S.191, T.192, K.193 Ligands: MN.5, MN.20 11 PLIP interactions: 2 interactions with chain G, 1 interactions with chain B, 8 interactions with chain L Hydrogen bonds: G:E.166, G:K.170, L:R.92, L:R.92, L:R.114, L:R.114, L:S.191, L:T.192 Water bridges: B:E.14, L:Y.93, L:D.110 5LD.11: 17 residues within 4Å: Chain C: H.40, L.100, H.162, H.163, E.166, K.170 Chain E: R.92, R.114, S.191, T.192, K.193 Chain Q: E.14, H.66, H.67, E.70 Ligands: MN.8, MN.9 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:R.92, E:R.92, E:R.114, E:R.114, E:S.191, E:T.192, C:K.170 Water bridges: E:Y.93, C:K.170 5LD.13: 17 residues within 4Å: Chain B: R.92, R.114, S.191, T.192, K.193 Chain D: H.40, L.100, H.162, H.163, E.166, K.170 Chain L: E.14, H.66, H.67, E.70 Ligands: MN.12, MN.33 12 PLIP interactions: 10 interactions with chain B, 1 interactions with chain D, 1 interactions with chain L Hydrogen bonds: B:R.92, B:R.92, B:R.114, B:R.114, B:S.191, B:T.192, D:K.170 Water bridges: B:Y.93, B:D.110, B:S.112, B:K.193, L:E.14 5LD.15: 17 residues within 4Å: Chain A: R.92, R.114, S.191, T.192, K.193 Chain E: H.40, L.100, H.162, H.163, E.166, K.170 Chain K: E.14, H.66, H.67, E.70 Ligands: MN.14, MN.29 9 PLIP interactions: 1 interactions with chain E, 7 interactions with chain A, 1 interactions with chain K Hydrogen bonds: E:K.170, A:R.92, A:R.92, A:R.114, A:R.114, A:T.192 Water bridges: A:Y.93, A:D.110, K:E.14 5LD.18: 17 residues within 4Å: Chain F: H.40, L.100, H.162, H.163, E.166, K.170 Chain G: E.14, H.66, H.67, E.70 Chain H: R.92, R.114, S.191, T.192, K.193 Ligands: MN.17, MN.19 11 PLIP interactions: 9 interactions with chain H, 1 interactions with chain F, 1 interactions with chain G Hydrogen bonds: H:R.92, H:R.92, H:R.114, H:R.114, H:S.191, H:T.192, H:K.193, F:K.170 Water bridges: H:Y.93, H:D.110, G:E.14 5LD.24: 17 residues within 4Å: Chain H: H.40, L.100, H.162, H.163, E.166, K.170 Chain J: R.92, R.114, S.191, T.192, K.193 Chain P: E.14, H.66, H.67, E.70 Ligands: MN.21, MN.22 10 PLIP interactions: 9 interactions with chain J, 1 interactions with chain H Hydrogen bonds: J:R.92, J:R.92, J:R.114, J:R.114, J:S.191, J:T.192, H:K.170 Water bridges: J:Y.93, J:D.110, J:T.192 5LD.26: 17 residues within 4Å: Chain G: R.92, R.114, S.191, T.192, K.193 Chain H: E.14, H.66, H.67, E.70 Chain I: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.23, MN.25 8 PLIP interactions: 6 interactions with chain G, 1 interactions with chain I, 1 interactions with chain H Hydrogen bonds: G:R.92, G:R.92, G:R.114, G:R.114, G:S.191, I:K.170 Water bridges: G:T.192, H:E.14 5LD.28: 17 residues within 4Å: Chain C: E.14, H.66, H.67, E.70 Chain F: R.92, R.114, S.191, T.192, K.193 Chain J: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.10, MN.27 10 PLIP interactions: 8 interactions with chain F, 1 interactions with chain C, 1 interactions with chain J Hydrogen bonds: F:R.92, F:R.92, F:R.114, F:R.114, F:S.191, F:T.192, J:K.170 Water bridges: F:Y.93, F:D.110, C:E.14 5LD.32: 17 residues within 4Å: Chain D: R.92, R.114, S.191, T.192, K.193 Chain K: H.40, L.100, H.162, H.163, E.166, K.170 Chain V: E.14, H.66, H.67, E.70 Ligands: MN.30, MN.31 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain K Hydrogen bonds: D:R.92, D:R.92, D:R.114, D:R.114, D:S.191, D:T.192, D:K.193, K:E.166, K:K.170 Water bridges: D:Y.93, D:D.110, D:T.192 5LD.36: 17 residues within 4Å: Chain I: R.92, R.114, S.191, T.192, K.193 Chain L: H.40, L.100, H.162, H.163, E.166, K.170 Chain U: E.14, H.66, H.67, E.70 Ligands: MN.34, MN.35 11 PLIP interactions: 10 interactions with chain I, 1 interactions with chain L Hydrogen bonds: I:R.92, I:R.92, I:R.114, I:R.114, I:S.191, I:T.192, I:K.193, L:K.170 Water bridges: I:Y.93, I:D.110, I:T.192 5LD.40: 17 residues within 4Å: Chain M: H.40, L.100, H.162, H.163, E.166, K.170 Chain O: R.92, R.114, S.191, T.192, K.193 Chain R: E.14, H.66, H.67, E.70 Ligands: MN.38, MN.53 10 PLIP interactions: 1 interactions with chain M, 9 interactions with chain O Hydrogen bonds: M:K.170, O:R.92, O:R.92, O:R.114, O:R.114, O:S.191, O:T.192 Water bridges: O:Y.93, O:D.110, O:T.192 5LD.43: 17 residues within 4Å: Chain M: E.14, H.66, H.67, E.70 Chain N: H.40, L.100, H.162, H.163, E.166, K.170 Chain W: R.92, R.114, S.191, T.192, K.193 Ligands: MN.39, MN.41 10 PLIP interactions: 9 interactions with chain W, 1 interactions with chain N Hydrogen bonds: W:R.92, W:R.92, W:R.114, W:R.114, W:S.191, W:T.192, N:K.170 Water bridges: W:Y.93, W:D.110, W:T.192 5LD.44: 17 residues within 4Å: Chain N: E.14, H.66, H.67, E.70 Chain S: H.40, L.100, H.162, H.163, E.166, K.170 Chain X: R.92, R.114, S.191, T.192, K.193 Ligands: MN.42, MN.57 11 PLIP interactions: 3 interactions with chain S, 8 interactions with chain X Hydrogen bonds: S:E.166, S:K.170, X:R.92, X:R.92, X:R.114, X:R.114, X:S.191, X:T.192 Water bridges: S:E.166, X:Y.93, X:D.110 5LD.48: 17 residues within 4Å: Chain E: E.14, H.66, H.67, E.70 Chain O: H.40, L.100, H.162, H.163, E.166, K.170 Chain Q: R.92, R.114, S.191, T.192, K.193 Ligands: MN.45, MN.46 11 PLIP interactions: 7 interactions with chain Q, 4 interactions with chain O Hydrogen bonds: Q:R.92, Q:R.92, Q:R.114, Q:R.114, Q:S.191, Q:T.192, O:E.166, O:K.170 Water bridges: Q:Y.93, O:E.166, O:K.170 5LD.50: 17 residues within 4Å: Chain N: R.92, R.114, S.191, T.192, K.193 Chain P: H.40, L.100, H.162, H.163, E.166, K.170 Chain X: E.14, H.66, H.67, E.70 Ligands: MN.49, MN.70 12 PLIP interactions: 11 interactions with chain N, 1 interactions with chain P Hydrogen bonds: N:R.92, N:R.92, N:R.114, N:R.114, N:S.191, N:T.192, P:K.170 Water bridges: N:Y.93, N:D.110, N:S.112, N:T.192, N:K.193 5LD.52: 17 residues within 4Å: Chain M: R.92, R.114, S.191, T.192, K.193 Chain Q: H.40, L.100, H.162, H.163, E.166, K.170 Chain W: E.14, H.66, H.67, E.70 Ligands: MN.51, MN.66 9 PLIP interactions: 8 interactions with chain M, 1 interactions with chain Q Hydrogen bonds: M:R.92, M:R.92, M:R.114, M:R.114, M:T.192, Q:K.170 Water bridges: M:Y.93, M:D.110, M:T.192 5LD.55: 17 residues within 4Å: Chain R: H.40, L.100, H.162, H.163, E.166, K.170 Chain S: E.14, H.66, H.67, E.70 Chain T: R.92, R.114, S.191, T.192, K.193 Ligands: MN.54, MN.56 11 PLIP interactions: 10 interactions with chain T, 1 interactions with chain R Hydrogen bonds: T:R.92, T:R.92, T:R.114, T:R.114, T:S.191, T:T.192, T:K.193, R:K.170 Water bridges: T:Y.93, T:D.110, T:T.192 5LD.61: 17 residues within 4Å: Chain D: E.14, H.66, H.67, E.70 Chain T: H.40, L.100, H.162, H.163, E.166, K.170 Chain V: R.92, R.114, S.191, T.192, K.193 Ligands: MN.58, MN.59 12 PLIP interactions: 8 interactions with chain V, 3 interactions with chain T, 1 interactions with chain D Hydrogen bonds: V:R.92, V:R.92, V:R.114, V:R.114, V:S.191, V:T.192, T:E.166, T:K.170 Water bridges: V:Y.93, V:D.110, T:E.166, D:E.14 5LD.63: 17 residues within 4Å: Chain S: R.92, R.114, S.191, T.192, K.193 Chain T: E.14, H.66, H.67, E.70 Chain U: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.60, MN.62 8 PLIP interactions: 1 interactions with chain U, 7 interactions with chain S Hydrogen bonds: U:K.170, S:R.92, S:R.92, S:R.114, S:R.114, S:S.191 Water bridges: S:T.192, S:T.192 5LD.65: 17 residues within 4Å: Chain O: E.14, H.66, H.67, E.70 Chain R: R.92, R.114, S.191, T.192, K.193 Chain V: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.47, MN.64 10 PLIP interactions: 1 interactions with chain V, 9 interactions with chain R Hydrogen bonds: V:K.170, R:R.92, R:R.92, R:R.114, R:R.114, R:S.191, R:T.192 Water bridges: R:Y.93, R:D.110, R:T.192 5LD.69: 17 residues within 4Å: Chain J: E.14, H.66, H.67, E.70 Chain P: R.92, R.114, S.191, T.192, K.193 Chain W: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.67, MN.68 11 PLIP interactions: 1 interactions with chain J, 9 interactions with chain P, 1 interactions with chain W Water bridges: J:E.14, P:Y.93, P:D.110 Hydrogen bonds: P:R.92, P:R.92, P:R.114, P:R.114, P:S.191, P:T.192, P:K.193, W:K.170 5LD.73: 17 residues within 4Å: Chain I: E.14, H.66, H.67, E.70 Chain U: R.92, R.114, S.191, T.192, K.193 Chain X: H.40, L.100, H.162, H.163, E.166, K.170 Ligands: MN.71, MN.72 11 PLIP interactions: 9 interactions with chain U, 1 interactions with chain X, 1 interactions with chain I Hydrogen bonds: U:R.92, U:R.92, U:R.114, U:R.114, U:S.191, U:T.192, U:K.193, X:K.170 Water bridges: U:Y.93, U:D.110, I:E.14

2 x MG: MAGNESIUM ION(Non-covalent)

MG.37: 2 residues within 4Å: Chain L: Q.7, Q.82 4 PLIP interactions: 1 interactions with chain L, 3 Ligand-Water interactions Metal complexes: L:Q.7, H2O.58, H2O.58, H2O.58 MG.74: 2 residues within 4Å: Chain X: Q.7, Q.82 4 PLIP interactions: 1 interactions with chain X, 3 Ligand-Water interactions Metal complexes: X:Q.7, H2O.116, H2O.117, H2O.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rice, C.A. et al., Structural and functional studies of histidine biosynthesis in Acanthamoeba spp. demonstrates a novel molecular arrangement and target for antimicrobials. PLoS ONE (2018)

Release Date

2018-07-18

Peptides

Imidazoleglycerol-phosphate dehydratase: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

T
H

U
I

V
J

W
K

X
L

Imidazoleglycerol-phosphate dehydratase