SMTL ID : 6g21.1 (1 other biounit)

Crystal structure of an esterase from Aspergillus oryzae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.24, F.25, D.39, A.59, T.71, E.73, N.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.24, A:D.39, A:D.39

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.34, S.48, V.50 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.50 Hydrogen bonds: A:N.34, A:S.48 NAG.3: 2 residues within 4Å: Chain A: N.66, E.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66, A:E.131 Water bridges: A:N.66 NAG.4: 4 residues within 4Å: Chain A: P.223, D.224, N.227, V.306 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.223 Hydrogen bonds: A:D.224, A:N.227 NAG.5: 2 residues within 4Å: Chain A: N.268, T.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.270 NAG.6: 2 residues within 4Å: Chain A: N.497, Y.498 No protein-ligand interaction detected (PLIP)

1 x FER: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID(Non-covalent)

FER.7: 1 residues within 4Å: Chain A: R.395 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.395 pi-Cation interactions: A:R.395

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: T.4, F.5, Q.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.5, A:Q.78 SO4.9: 3 residues within 4Å: Chain A: K.177, K.181, N.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.355 Water bridges: A:K.177 Salt bridges: A:K.177, A:K.181

1 x CA: CALCIUM ION(Non-covalent)

CA.10: 5 residues within 4Å: Chain A: D.238, D.241, A.243, D.245, I.247 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.238, A:D.241, A:D.241, A:A.243, A:I.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moroz, O.V. et al., Crystal structure of an esterase from Aspergillus oryzae. To Be Published

Release Date

2018-05-23

Peptides

Probable feruloyl esterase B-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable feruloyl esterase B-2

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