This entry has been superseded by
8P7U
on Feb. 14, 2024, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.38 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.2: 6 residues within 4Å:- Chain A: H.22, H.24, D.268
- Ligands: FMT.1, ZN.3, FU2.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.22, A:H.24, A:D.268, H2O.1
ZN.3: 6 residues within 4Å:- Chain A: W.98, H.168, H.197
- Ligands: FMT.1, ZN.2, FU2.4
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.168, A:H.197, H2O.1, H2O.1
ZN.9: 4 residues within 4Å:- Chain A: K.142, A.143, T.144, P.145
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:A.143
ZN.11: 6 residues within 4Å:- Chain B: H.22, H.24, D.268
- Ligands: FMT.10, ZN.12, FU2.13
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.22, B:H.24, B:D.268, H2O.14
ZN.12: 6 residues within 4Å:- Chain B: W.98, H.168, H.197
- Ligands: FMT.10, ZN.11, FU2.13
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.168, B:H.197, H2O.14, H2O.14
ZN.18: 4 residues within 4Å:- Chain B: K.142, A.143, T.144, P.145
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:A.143
- 2 x FU2: FURFURAL(Non-covalent)
FU2.4: 9 residues within 4Å:- Chain A: H.24, I.73, W.98, D.268, L.270, F.273
- Ligands: FMT.1, ZN.2, ZN.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.273
- Water bridges: A:G.27, A:S.275
FU2.13: 9 residues within 4Å:- Chain B: H.24, I.73, W.98, D.268, L.270, F.273
- Ligands: FMT.10, ZN.11, ZN.12
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.273
- Water bridges: B:G.27, B:S.275
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 7 residues within 4Å:- Chain A: Y.123, G.124, I.125, E.126, D.127, T.128, G.129
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.124, A:G.129
- Water bridges: A:T.128
GOL.6: 8 residues within 4Å:- Chain A: A.30, G.31, R.34, G.74, R.75, D.76, E.126
- Chain B: R.34
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.31, A:R.34, A:R.34, A:G.74, A:E.126
- Water bridges: A:F.32, A:L.33, A:G.74, A:V.77
GOL.14: 7 residues within 4Å:- Chain B: Y.123, G.124, I.125, E.126, D.127, T.128, G.129
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.124, B:G.129
- Water bridges: B:T.128
GOL.15: 8 residues within 4Å:- Chain A: R.34
- Chain B: A.30, G.31, R.34, G.74, R.75, D.76, E.126
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:G.31, B:R.34, B:R.34, B:G.74, B:E.126
- Water bridges: B:F.32, B:L.33, B:G.74, B:V.77
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x E8N: 1-ethyl-1-methyl-cyclohexane(Covalent)
E8N.8: 4 residues within 4Å:- Chain A: I.255, V.308, S.309, T.312
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.255, A:V.308, A:T.312
E8N.17: 4 residues within 4Å:- Chain B: I.255, V.308, S.309, T.312
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.255, B:V.308, B:T.312
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dym, O. et al., PhosphotriesterasePTE_C23M_2. To Be Published
- Release Date
- 2019-04-10
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A