SMTL ID : 6g3a.1

Crystal structure of haspin F605T mutant in complex with 5-iodotubercidin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: K.70, D.246 Ligands: 5ID.3 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: T.164 Ligands: 5ID.3 Ligand excluded by PLIP

1 x 5ID: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL(Non-covalent)

5ID.3: 19 residues within 4Å: Chain A: I.49, G.50, E.51, F.54, V.57, A.68, I.116, T.164, E.165, F.166, G.167, G.168, D.170, Q.173, G.212, L.215, I.245 Ligands: IOD.1, IOD.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.215 Hydrogen bonds: A:T.164, A:E.165, A:G.167, A:Q.173 Water bridges: A:I.49, A:D.170, A:D.170

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233, C.351 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: I.96, R.254, I.257, V.259 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heroven, C. et al., Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-04-18

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin