SMTL ID : 6g4b.1

Crystal structure of the omega transaminase from Pseudomonas jessenii in the apo form, crystallized from succinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 9 residues within 4Å: Chain A: S.117, G.118, S.119, V.260, S.286, K.287 Chain B: F.323, T.324 Ligands: GOL.2 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:T.324, B:T.324, A:G.118, A:S.119, A:S.119, A:S.286 Water bridges: B:N.116, B:G.325, A:K.287 Salt bridges: A:K.287 SIN.3: 9 residues within 4Å: Chain A: F.323, T.324 Chain B: S.117, G.118, S.119, V.260, S.286, K.287 Ligands: GOL.4 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.118, B:S.119, B:S.119, B:S.286, A:T.324, A:T.324, A:T.324 Salt bridges: B:K.287 Water bridges: A:N.116, A:G.325

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: N.116, S.117, S.286, K.287, S.290, S.292, Q.294, P.295, I.296 Chain B: T.324 Ligands: SIN.1 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.116, A:S.286, A:K.287, A:Q.294, A:I.296 Water bridges: B:N.116 GOL.4: 11 residues within 4Å: Chain A: T.324 Chain B: N.116, S.117, S.286, K.287, S.290, S.292, Q.294, P.295, I.296 Ligands: SIN.3 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.116, B:K.287, B:S.290, B:S.292, B:I.296 Water bridges: A:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palacio, C.M. et al., Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism. Febs J. (2019)

Release Date

2019-04-10

Peptides

Aspartate aminotransferase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate aminotransferase family protein

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