SMTL ID : 6g4q.1

Structure of human ADP-forming succinyl-CoA ligase complex SUCLG1-SUCLA2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Q.22, G.23, T.47, P.49, V.81, A.89, E.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.22, A:G.23, A:T.47, A:T.47, A:E.92 EDO.2: 7 residues within 4Å: Chain A: K.117, L.121, N.193, G.194, T.195, D.196, D.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.117, A:K.117, A:D.196, A:D.196 Water bridges: A:R.127 EDO.3: 5 residues within 4Å: Chain A: G.221, N.222, A.223, N.226 Chain B: R.125 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.222, A:A.223, A:N.226 Water bridges: B:R.125 EDO.4: 2 residues within 4Å: Chain A: Q.173, Q.176 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: A.87, N.91, D.112, R.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:A.88 EDO.6: 6 residues within 4Å: Chain A: H.10, Y.12, V.13, T.17, T.75, P.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.10, A:T.17, A:T.75 EDO.7: 4 residues within 4Å: Chain A: K.66, E.95, A.96, E.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.66 EDO.8: 7 residues within 4Å: Chain B: Y.8, M.11, E.12, Q.15, V.21, P.22, G.24 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.22, B:G.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, H.J. et al., Structure of human ADP-forming succinyl-CoA ligase complex SUCLG1-SUCLA2. To Be Published

Release Date

2018-04-11

Peptides

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial: A
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial