SMTL ID : 6g5n.2 (1 other biounit)

Crystal structure of human SP100 in complex with bromodomain-focused fragment XS039818e 1-(3-Phenyl-1,2,4-oxadiazol-5-yl)methanamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.6, C.9, H.26, C.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:H.26, A:C.29 ZN.2: 4 residues within 4Å: Chain A: C.18, C.21, C.43, C.46 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.43, A:C.46

2 x EDO: ethane-1,2-diol(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.47, I.51, P.74, E.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.47 Water bridges: A:E.75 EDO.4: 5 residues within 4Å: Chain A: F.45, I.48, K.49, Q.52, F.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.45, A:Q.52

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: Y.128, T.129, R.130, G.133 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talon, R.P.H. et al., Identifying small molecule binding sites for epigenetic proteins at domain-domain interfaces. Biorxiv (2018)

Release Date

2018-04-11

Peptides

Nuclear autoantigen Sp-100: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nuclear autoantigen Sp-100

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