SMTL ID : 6g63.1

RNase E in complex with sRNA RrpA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.95 Å

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.404, R.406, C.407, G.411 Chain B: C.404, R.406, C.407, G.411 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.404, B:C.407, A:C.404, A:C.407 ZN.2: 6 residues within 4Å: Chain C: C.404, R.406, C.407 Chain D: C.404, R.406, C.407 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Metal complexes: D:C.404, D:C.407, C:C.404, C:C.407

1 x U: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U.3: 8 residues within 4Å: Chain D: V.128, S.140, R.142, I.167, R.169, T.170, R.223, R.371 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:V.128, D:I.167 Hydrogen bonds: D:S.140, D:R.169, D:T.170, D:T.170, D:R.223 Salt bridges: D:R.142, D:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bandyra, K.J. et al., Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E. Mol. Cell (2018)

Release Date

2018-10-03

Peptides

Ribonuclease E: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

C
L

D
N

Ribonuclease E