SMTL ID : 6gcn.1 (1 other biounit)

Truncated FtsH from A. aeolicus in R32

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:A.29, A:A.29, A:G.69, A:V.70, A:G.71, A:K.72, A:T.73, A:T.73, A:T.73, A:L.74, A:H.209, A:G.233, A:E.237 Salt bridges: A:K.72 ADP.3: 18 residues within 4Å: Chain B: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.29, B:A.29, B:G.69, B:V.70, B:G.71, B:K.72, B:T.73, B:T.73, B:T.73, B:L.74, B:H.209, B:G.233, B:E.237 Salt bridges: B:K.72 ADP.7: 18 residues within 4Å: Chain C: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:A.29, C:A.29, C:G.69, C:V.70, C:G.71, C:K.72, C:T.73, C:T.73, C:T.73, C:L.74, C:H.209, C:G.233, C:E.237 Salt bridges: C:K.72 ADP.9: 18 residues within 4Å: Chain D: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:A.29, D:A.29, D:G.69, D:V.70, D:G.71, D:K.72, D:T.73, D:T.73, D:T.73, D:L.74, D:H.209, D:G.233, D:E.237 Salt bridges: D:K.72 ADP.13: 18 residues within 4Å: Chain E: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:A.29, E:A.29, E:G.69, E:V.70, E:G.71, E:K.72, E:T.73, E:T.73, E:T.73, E:L.74, E:H.209, E:G.233, E:E.237 Salt bridges: E:K.72 ADP.15: 18 residues within 4Å: Chain F: D.27, V.28, A.29, I.31, E.67, P.68, G.69, V.70, G.71, K.72, T.73, L.74, I.205, V.208, H.209, G.233, A.234, E.237 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:A.29, F:A.29, F:G.69, F:V.70, F:G.71, F:K.72, F:T.73, F:T.73, F:T.73, F:L.74, F:H.209, F:G.233, F:E.237 Salt bridges: F:K.72

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.289, R.314, D.367 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.289, A:D.367, A:D.367, H2O.1 ZN.4: 5 residues within 4Å: Chain B: H.289, H.293, D.367 Ligands: ALA.5, ALA.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:H.289, B:H.293, B:D.367, B:D.367, ALA.6 ZN.8: 3 residues within 4Å: Chain C: H.289, R.314, D.367 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.289, C:D.367, C:D.367, H2O.1 ZN.10: 5 residues within 4Å: Chain D: H.289, H.293, D.367 Ligands: ALA.11, ALA.12 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:H.289, D:H.293, D:D.367, D:D.367, ALA.12 ZN.14: 3 residues within 4Å: Chain E: H.289, R.314, D.367 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.289, E:D.367, E:D.367, H2O.1 ZN.16: 5 residues within 4Å: Chain F: H.289, H.293, D.367 Ligands: ALA.17, ALA.18 5 PLIP interactions: 1 Ligand-Ligand interactions, 4 interactions with chain F Metal complexes: ALA.18, F:H.289, F:H.293, F:D.367, F:D.367

6 x ALA: ALANINE(Non-covalent)

ALA.5: 7 residues within 4Å: Chain B: H.293, V.343, L.344, D.367, R.370 Ligands: ZN.4, ALA.6 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.344 ALA.6: 9 residues within 4Å: Chain B: H.289, E.290, H.293, L.344, N.366, D.367, R.370 Ligands: ZN.4, ALA.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.367, B:R.370 Salt bridges: B:H.289, B:H.293 ALA.11: 7 residues within 4Å: Chain D: H.293, V.343, L.344, D.367, R.370 Ligands: ZN.10, ALA.12 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:L.344 ALA.12: 9 residues within 4Å: Chain D: H.289, E.290, H.293, L.344, N.366, D.367, R.370 Ligands: ZN.10, ALA.11 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.367, D:R.370 Salt bridges: D:H.289, D:H.293 ALA.17: 7 residues within 4Å: Chain F: H.293, V.343, L.344, D.367, R.370 Ligands: ZN.16, ALA.18 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:L.344 ALA.18: 9 residues within 4Å: Chain F: H.289, E.290, H.293, L.344, N.366, D.367, R.370 Ligands: ZN.16, ALA.17 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.367, F:R.370 Salt bridges: F:H.289, F:H.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uthoff, M. et al., Conformational flexibility of pore loop-1 gives insights into substrate translocation by the AAA+protease FtsH. J. Struct. Biol. (2018)

Release Date

2018-08-22

Peptides

ATP-dependent zinc metalloprotease FtsH: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

ATP-dependent zinc metalloprotease FtsH

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