SMTL ID : 6gcs.1

Cryo-EM structure of respiratory complex I from Yarrowia lipolytica

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 4.32 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
1 x ZMP: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate(Covalent)
1 x CDL: CARDIOLIPIN(Non-covalent)
3 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Parey, K. et al., Cryo-EM structure of respiratory complex I at work. Elife (2018)
Release Date
2018-10-10
Peptides
75-KDA PROTEIN (NUAM): A
51-KDA PROTEIN (NUBM): B
49-KDA PROTEIN (NUCM): C
NIMM SUBUNIT: D
NUEM SUBUNIT: E
NUFM SUBUNIT: F
30-KDA PROTEIN (NUGM): G
24-KDA SUBUNIT (NUHM): H
TYKY SUBUNIT (NUIM): I
NUJM SUBUNIT: J
PSST SUBUNIT (NUKM): K
ND4L SUBUNIT (NULM): L
NUMM SUBUNIT: M
ACPM1 SUBUNIT: N
NB4M SUBUNIT: O
ACPM2 SUBUNIT: P
NI2M SUBUNIT: Q
NESM SUBUNIT: R
NUPM SUBUNIT: S
NB6M SUBUNIT: T
NUXM SUBUNIT: U
NUYM SUBUNIT: V
NUZM SUBUNIT: W
NIAM SUBUNIT: X
NEBM SUBUNIT: Y
NB2M SUBUNIT: Z
NIDM SUBUNIT: 0
NUUM SUBUNIT: 1
NI8M SUBUNIT: 2
NI9M SUBUNIT: 3
N7BM SUBUNIT: 4
UNKNOWN SUBUNIT: 5
NB5M SUBUNIT: 6
NUNM SUBUNIT: 7
ND1 SUBUNIT (NU1M): 8
ND2 SUBUNIT (NU2M): 9
ND3 SUBUNIT (NU3M): a
ND4 SUBUNIT (NU4M): b
ND5 SUBUNIT (NU5M): c
ND6 SUBUNIT (NU6M): d
NB8M SUBUNIT: e
NIPM SUBUNIT: f
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
O
O
P
P
Q
Q
R
R
S
S
U
T
W
U
X
V
Y
W
Z
X
a
Y
b
Z
c
0
d
1
e
2
f
3
g
4
h
5
i
6
j
7
n
8
1
9
2
a
3
b
4
c
5
d
6
e
8
f
9

75-KDA PROTEIN (NUAM)

51-KDA PROTEIN (NUBM)

49-KDA PROTEIN (NUCM)

NIMM SUBUNIT

NUEM SUBUNIT

NUFM SUBUNIT

30-KDA PROTEIN (NUGM)

24-KDA SUBUNIT (NUHM)

TYKY SUBUNIT (NUIM)

NUJM SUBUNIT

PSST SUBUNIT (NUKM)

ND4L SUBUNIT (NULM)

NUMM SUBUNIT

ACPM1 SUBUNIT

NB4M SUBUNIT

ACPM2 SUBUNIT

NI2M SUBUNIT

NESM SUBUNIT

NUPM SUBUNIT

NB6M SUBUNIT

NUXM SUBUNIT

NUYM SUBUNIT

NUZM SUBUNIT

NIAM SUBUNIT

NEBM SUBUNIT

NB2M SUBUNIT

NIDM SUBUNIT

NUUM SUBUNIT

NI8M SUBUNIT

NI9M SUBUNIT

N7BM SUBUNIT

UNKNOWN SUBUNIT

NB5M SUBUNIT

NUNM SUBUNIT

ND1 SUBUNIT (NU1M)

ND2 SUBUNIT (NU2M)

ND3 SUBUNIT (NU3M)

ND4 SUBUNIT (NU4M)

ND5 SUBUNIT (NU5M)

ND6 SUBUNIT (NU6M)

NB8M SUBUNIT

NIPM SUBUNIT

Related Entries With Identical Sequence

1w5c.1 | 1w5c.2 | 1z56.1 | 2wsc.1 | 2wse.1 | 2wsf.1 | 3j5m.1 | 3lw5.1 | 4v6i.23 | 4v7r.22 | 4v7r.82 | 4wz7.1 | 5afu.1 | 5cdc.1 | 5cdc.2 | 5cdc.3 | 5cdc.4 | 5gan.1 | 5j4z.11 | 5j4z.20 | 5j7y.11 | 5j7y.20 | 5j8k.11 | 5j8k.20 | 5nw4.1 | 6f1t.1 | 6f38.1 | 6f3a.1 | 6h8k.38 | 6hqa.1