SMTL ID : 6gd6.1

Cytochrome c in complex with Sulfonato-calix[8]arene, H3 form with ammonium sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 26 residues within 4Å: Chain A: R.18, C.19, Q.21, C.22, H.23, V.33, G.34, P.35, L.37, I.40, S.45, G.46, Y.51, Y.53, T.54, N.57, W.64, M.69, Y.72, L.73, T.83, K.84, M.85, A.86, F.87, L.99 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:L.37, A:L.37, A:I.40, A:Y.51, A:Y.72, A:L.73, A:M.85, A:F.87, A:L.99 Hydrogen bonds: A:G.46, A:Y.53, A:T.54, A:N.57, A:T.83, A:T.83, A:K.84 Water bridges: A:Q.47, A:A.48 Metal complexes: A:H.23

1 x EVB: sulfonato-calix[8]arene(Non-covalent)

EVB.2: 8 residues within 4Å: Chain A: A.5, S.7, A.8, K.9, A.12, T.101, Y.102, K.105 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:K.9, A:A.12, A:T.101, A:K.105, A:K.105 Hydrogen bonds: A:A.8, A:K.9 Water bridges: A:G.6, A:S.7, A:K.9, A:K.9, A:K.105, A:K.105 Salt bridges: A:K.9, A:K.9, A:K.105, A:K.105 pi-Stacking: A:Y.102 pi-Cation interactions: A:K.105

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.42, R.43, H.44, Q.47 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.44 Water bridges: A:H.44, A:H.44, A:H.44, A:H.44 Salt bridges: A:H.44 SO4.4: 3 residues within 4Å: Chain A: K.91, K.92, E.93 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.93 Water bridges: A:K.91, A:K.94, A:R.96 SO4.5: 3 residues within 4Å: Chain A: K.27, H.38, R.43 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.38 Water bridges: A:R.43, A:R.43, A:E.49 Salt bridges: A:K.27, A:R.43 SO4.6: 1 residues within 4Å: Chain A: K.104 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.104 Salt bridges: A:K.104 SO4.7: 1 residues within 4Å: Chain A: K.60 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.60, A:K.60, A:K.60, A:K.60, A:K.60, A:K.60, A:K.60 Salt bridges: A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rennie, M.L. et al., Auto-regulated Protein Assembly on a Supramolecular Scaffold. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-08-29

Peptides

Cytochrome c iso-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c iso-1

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