SMTL ID : 6gj9.1

PURPLE ACID PHYTASE FROM WHEAT ISOFORM B2 - REGENERATION COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: K.474, N.475, T.477, H.478, Y.499 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.499

2 x FE: FE (III) ION(Non-covalent)

FE.2: 7 residues within 4Å: Chain A: D.174, D.201, Y.204, H.377, H.379 Ligands: FE.3, PO4.10 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.174, A:D.201, A:Y.204, A:H.379, H2O.1 FE.3: 7 residues within 4Å: Chain A: D.174, D.201, N.258, H.340, H.377 Ligands: FE.2, PO4.10 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.201, A:H.340, A:H.377, H2O.1

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 7 residues within 4Å: Chain A: G.70, L.107, Y.108, P.109, L.113, N.115, I.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.115 Water bridges: A:Y.108, A:F.110, A:L.113 NAG.5: 6 residues within 4Å: Chain A: R.18, G.22, H.23, N.180, M.411, F.466 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.466 Hydrogen bonds: A:R.18, A:N.180 Water bridges: A:H.23, A:N.180 NAG.6: 3 residues within 4Å: Chain A: L.209, N.211, T.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.213, A:T.213 Water bridges: A:N.211 NAG.7: 2 residues within 4Å: Chain A: G.266, N.267 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.267 NAG.8: 5 residues within 4Å: Chain A: E.363, F.388, N.389, T.442, S.443 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.442, A:T.442 Water bridges: A:R.358, A:R.358, A:N.389 NAG.9: 6 residues within 4Å: Chain A: C.422, N.440, G.448, S.449, F.450, C.451 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.440, A:F.450, A:C.451 Water bridges: A:S.449, A:S.449

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 11 residues within 4Å: Chain A: D.174, D.201, Y.204, N.258, H.259, H.350, H.377, H.379, E.409 Ligands: FE.2, FE.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.258 Water bridges: A:N.258, A:N.258 Salt bridges: A:H.259, A:H.350, A:H.377, A:H.379

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 2 residues within 4Å: Chain A: P.445 Ligands: PEG.12 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.445

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 8 residues within 4Å: Chain A: P.445, A.446, S.449, C.451, W.452, D.453, R.454 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faba-Rodriguez, R. et al., Crystal structure of a cereal purple acid phytase provides insights to phytate degradation in plants. To Be Published

Release Date

2019-11-27

Peptides

Purple acid phosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Purple acid phosphatase

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