SMTL ID : 6gjb.1

Erk2 signalling protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.195, R.199, R.202, Y.241 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.194, A:Y.241, A:Y.241 Salt bridges: A:R.199, A:R.202 SO4.2: 3 residues within 4Å: Chain A: Y.121, K.159, S.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.161, A:S.161 Water bridges: A:K.159 Salt bridges: A:K.159 SO4.3: 2 residues within 4Å: Chain A: R.199, K.239 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.199 Salt bridges: A:R.199 SO4.4: 1 residues within 4Å: Chain A: I.264 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.269, A:R.269 SO4.5: 5 residues within 4Å: Chain A: T.71, R.75, L.178, R.180, V.196 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.180, A:R.180 Salt bridges: A:R.75, A:R.180

1 x F0H: [(1~{R},4~{Z})-cyclooct-4-en-1-yl] ~{N}-[4-[4-[[4-[1-[(1~{S})-1-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanyl-ethyl]-2-oxidanylidene-pyridin-4-yl]pyrimidin-2-yl]amino]pyridin-2-yl]but-3-ynyl]carbamate(Non-covalent)

F0H.6: 20 residues within 4Å: Chain A: I.39, G.42, G.45, V.47, A.60, K.62, E.79, I.92, Q.113, D.114, L.115, M.116, E.117, D.119, K.122, S.161, N.162, L.164, C.174, D.175 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.60 Hydrogen bonds: A:K.62, A:M.116, A:M.116, A:K.122, A:S.161, A:D.175 Water bridges: A:Q.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lebraud, H. et al., Quantitation of ERK1/2 inhibitor cellular target occupancies with a reversible slow off-rate probe. Chem Sci (2018)

Release Date

2019-01-02

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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