SMTL ID : 6gnh.1

Crystal Structure of Leishmania major N-Myristoyltransferase (NMT) With Bound Myristoyl-CoA and an Azepanyl Phenyl Benzylsulphonamide Ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 33 residues within 4Å: Chain A: H.29, A.30, F.31, W.32, N.96, Y.97, V.98, I.183, N.184, F.185, L.186, C.187, V.188, R.193, E.194, K.195, R.196, L.197, A.198, P.199, I.202, T.206, V.209, N.210, V.214, W.215, Q.216, A.217, Y.219, T.220, A.221, L.225, Y.421 41 PLIP interactions: 41 interactions with chain A Hydrophobic interactions: A:W.32, A:W.32, A:Y.97, A:V.98, A:I.183, A:I.183, A:I.183, A:L.186, A:V.188, A:I.202, A:V.209, A:A.217, A:Y.219, A:Y.219, A:Y.421, A:Y.421 Hydrogen bonds: A:A.30, A:F.31, A:W.32, A:Y.97, A:F.185, A:L.186, A:L.186, A:V.188, A:R.193, A:R.193, A:E.194, A:R.196, A:L.197, A:A.198 Water bridges: A:A.28, A:H.29, A:K.195, A:K.195, A:R.196, A:R.196, A:R.196, A:R.196 Salt bridges: A:H.29, A:R.196, A:R.196

1 x F4T: methyl 4-(azepan-1-yl)-3-[(4-methoxyphenyl)sulfonylamino]benzoate(Non-covalent)

F4T.2: 15 residues within 4Å: Chain A: V.98, E.99, D.100, F.105, F.107, Y.234, H.236, R.248, F.249, S.347, L.358, N.393, G.412, D.413, G.414 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.105, A:F.105, A:F.249, A:L.358 Hydrogen bonds: A:S.347, A:N.393, A:D.413, A:G.414 Water bridges: A:R.248 pi-Stacking: A:F.105, A:Y.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, J.R. et al., A Molecular Hybridization Approach for the Design of Potent, Highly Selective, and Brain-Penetrant N-Myristoyltransferase Inhibitors. J. Med. Chem. (2018)

Release Date

2018-09-26

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

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