- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 5 x R16: HEXADECANE(Non-covalent)
R16.2: 11 residues within 4Å:- Chain A: Y.4, L.15, W.16, I.19, L.23, L.210, M.213, V.214, V.217
- Ligands: R16.4, DD9.11
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.15, A:W.16, A:I.19, A:L.23, A:V.214
R16.3: 11 residues within 4Å:- Chain A: M.149, I.150, L.153, Y.154, A.157, T.158, L.183, V.184, T.187, A.188, I.191
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.153, A:T.187
R16.4: 10 residues within 4Å:- Chain A: L.23, I.26, G.27, Y.30, V.217, T.218, V.221, G.222, F.225
- Ligands: R16.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.23, A:I.26, A:Y.30, A:Y.30, A:V.217, A:T.218
R16.5: 12 residues within 4Å:- Chain A: D.108, V.110, T.111, T.114, V.118, L.121, F.144, I.147, C.148, V.151, F.155
- Ligands: D12.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.110, A:T.114, A:V.118
R16.6: 6 residues within 4Å:- Chain A: I.136, S.140, L.143, F.144, I.147
- Ligands: DD9.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.144, A:I.147
- 1 x D12: DODECANE(Non-covalent)
- 5 x DD9: nonane(Non-covalent)
DD9.8: 6 residues within 4Å:- Chain A: I.136, A.137, S.140, W.141, F.144
- Ligands: R16.6
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.141, A:F.144
DD9.9: 10 residues within 4Å:- Chain A: L.6, L.15, G.18, I.19, T.21, L.22, L.62, F.65, F.66
- Ligands: DD9.11
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.19, A:T.21, A:L.22, A:L.62, A:F.65, A:F.65
DD9.10: 6 residues within 4Å:- Chain A: A.59, L.62, S.63, F.66, I.68
- Ligands: DD9.12
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.62, A:I.68
DD9.11: 6 residues within 4Å:- Chain A: Y.4, L.6, L.15, I.19
- Ligands: R16.2, DD9.9
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.4, A:L.15, A:I.19
DD9.12: 8 residues within 4Å:- Chain A: T.28, L.32, I.51, L.52, G.55, I.56, A.59
- Ligands: DD9.10
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:A.59
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bada Juarez, J.F. et al., Structures of the archaerhodopsin-3 transporter reveal that disordering of internal water networks underpins receptor sensitization. Nat Commun (2021)
- Release Date
- 2019-10-09
- Peptides
- Archaerhodopsin-3: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 5 x R16: HEXADECANE(Non-covalent)
- 1 x D12: DODECANE(Non-covalent)
- 5 x DD9: nonane(Non-covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bada Juarez, J.F. et al., Structures of the archaerhodopsin-3 transporter reveal that disordering of internal water networks underpins receptor sensitization. Nat Commun (2021)
- Release Date
- 2019-10-09
- Peptides
- Archaerhodopsin-3: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.