SMTL ID : 6gvb.2 (1 other biounit)

Crystal structure of Cutibacterium acnes exo-beta-1,4-mannosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

6 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.1: 12 residues within 4Å: Chain A: K.2, H.39, E.77, T.79, R.183, W.185, S.210, A.211, P.254, W.256, E.290, A.291 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.290 Salt bridges: A:E.77, A:R.183 MPO.2: 7 residues within 4Å: Chain A: H.86, S.89, E.140, H.151, F.219, E.311 Chain B: W.100 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.140, A:E.311 Water bridges: A:S.88, A:N.139, A:N.139, A:E.311 Salt bridges: A:H.86 pi-Cation interactions: B:W.100, B:W.100 MPO.3: 3 residues within 4Å: Chain A: D.269, R.302, S.313 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.302, A:S.313 Water bridges: A:S.313 Salt bridges: A:D.269 MPO.4: 12 residues within 4Å: Chain B: K.2, H.39, E.77, T.79, R.183, W.185, S.210, A.211, P.254, W.256, E.290, A.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.185 Salt bridges: B:E.77, B:R.183 MPO.5: 6 residues within 4Å: Chain A: W.100 Chain B: H.86, S.89, E.140, H.151, E.311 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.140 Water bridges: B:H.86, B:S.88, B:S.88, B:N.139, B:N.139, B:E.140 Salt bridges: B:H.86 pi-Cation interactions: A:W.100, A:W.100 MPO.6: 3 residues within 4Å: Chain B: D.269, R.302, S.313 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.302, B:S.313 Water bridges: B:D.269, B:D.269, B:S.270, B:S.313 Salt bridges: B:D.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reichenbach, T. et al., Structural and biochemical characterization of the Cutibacterium acnes exo-beta-1,4-mannosidase that targets the N-glycan core of host glycoproteins. Plos One (2018)

Release Date

2019-07-03

Peptides

exo-beta-1,4-mannosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

exo-beta-1,4-mannosidase

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