SMTL ID : 6h30.1 (1 other biounit)

The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

22 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: W.26, L.45, E.46, M.47 Ligand excluded by PLIP PEG.2: 2 residues within 4Å: Chain A: E.36, K.39 Ligand excluded by PLIP PEG.3: 2 residues within 4Å: Chain A: N.41, K.205 Ligand excluded by PLIP PEG.4: 7 residues within 4Å: Chain A: A.120, W.124, E.127, I.181, S.182, D.236, K.276 Ligand excluded by PLIP PEG.5: 4 residues within 4Å: Chain A: S.165, M.168, K.169, G.224 Ligand excluded by PLIP PEG.6: 4 residues within 4Å: Chain A: T.97, D.99, G.152 Ligands: PEG.8 Ligand excluded by PLIP PEG.7: 5 residues within 4Å: Chain A: K.109, K.130, K.131, Y.132, G.133 Ligand excluded by PLIP PEG.8: 3 residues within 4Å: Chain A: G.152, N.153 Ligands: PEG.6 Ligand excluded by PLIP PEG.9: 1 residues within 4Å: Chain A: K.221 Ligand excluded by PLIP PEG.10: 3 residues within 4Å: Chain A: K.235, G.294, D.297 Ligand excluded by PLIP PEG.11: 3 residues within 4Å: Chain A: A.353, P.415, D.416 Ligand excluded by PLIP PEG.12: 3 residues within 4Å: Chain A: T.4, W.43, T.198 Ligand excluded by PLIP PEG.13: 5 residues within 4Å: Chain A: I.282, G.283, F.284, Q.285, A.286 Ligand excluded by PLIP PEG.14: 1 residues within 4Å: Chain A: Q.170 Ligand excluded by PLIP PEG.15: 4 residues within 4Å: Chain A: Q.257, F.258, N.267, W.279 Ligand excluded by PLIP PEG.16: 3 residues within 4Å: Chain A: N.253, D.254, K.256 Ligand excluded by PLIP PEG.17: 4 residues within 4Å: Chain A: W.124, N.128, V.237, K.276 Ligand excluded by PLIP PEG.18: 1 residues within 4Å: Chain A: V.237 Ligand excluded by PLIP PEG.19: 6 residues within 4Å: Chain A: Y.87, Y.88, T.89, K.211, Y.216, K.230 Ligand excluded by PLIP PEG.20: 3 residues within 4Å: Chain A: V.161, S.180, K.230 Ligand excluded by PLIP PEG.21: 5 residues within 4Å: Chain A: A.375, Y.379, V.396, Y.399, A.400 Ligand excluded by PLIP PEG.22: 2 residues within 4Å: Chain A: G.110, K.111 Ligand excluded by PLIP

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.23: 8 residues within 4Å: Chain A: D.11, Y.14, F.52, A.69, G.70, M.71, T.72, R.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.72, A:T.72 Salt bridges: A:R.77 pi-Cation interactions: A:Y.14 MES.24: 9 residues within 4Å: Chain A: D.243, F.246, F.284, S.301, G.302, M.303, S.304, R.309 Ligands: PG4.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.304 Salt bridges: A:R.309

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.25: 7 residues within 4Å: Chain A: F.258, T.259, D.264, E.447, K.450, K.454, Y.455 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.259, A:D.264, A:E.447, A:K.454 Water bridges: A:K.450 PG4.26: 6 residues within 4Å: Chain A: I.305, D.307, K.310, D.314, Y.315, G.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.305, A:K.310, A:Y.315 Water bridges: A:D.307 PG4.27: 4 residues within 4Å: Chain A: D.53, L.56, K.60, T.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.60, A:T.80 PG4.31: 5 residues within 4Å: Chain A: D.243, N.244, S.245, F.246 Ligands: MES.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.244 Water bridges: A:S.245

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.28: 10 residues within 4Å: Chain A: W.124, N.128, K.131, Y.132, P.179, I.181, N.267, F.275, K.276, L.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.128, A:K.276, A:L.277

2 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.29: 10 residues within 4Å: Chain A: I.73, T.74, D.75, E.76, K.78, F.83, S.84, P.184, G.185, K.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.75, A:D.75, A:E.76, A:K.78 PE5.30: 12 residues within 4Å: Chain A: P.318, Y.319, Y.320, S.321, E.394, K.398, Q.418, R.443, Y.448, I.452, D.453, E.457 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.318 Hydrogen bonds: A:S.321, A:R.443, A:Y.448, A:D.453, A:E.457

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.32: 6 residues within 4Å: Chain A: F.284, Q.285, A.308, R.309, V.312, F.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.285, A:R.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuurman-Wolters, G.K. et al., The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter. To Be Published

Release Date

2019-08-14

Peptides

Glutamine ABC transporter permease and substrate binding protein protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamine ABC transporter permease and substrate binding protein protein

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