SMTL ID : 6h3g.1

Alcohol oxidase from Phanerochaete chrysosporium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-octamer

Ligands

8 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: G.13, G.14, G.15, P.16, A.17, E.38, G.39, M.59, A.90, N.91, I.92, G.95, G.96, I.99, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.99, A:N.100, A:W.560, A:W.560, A:W.560 Hydrogen bonds: A:G.14, A:A.17, A:G.39, A:G.40, A:A.90, A:I.92, A:G.95, A:G.96, A:G.96, A:N.100, A:F.101, A:Q.102, A:M.103, A:M.103, A:V.229, A:V.229, A:S.272, A:W.560, A:L.594, A:N.604, A:T.605, A:Y.606 Water bridges: A:G.18, A:T.274, A:T.274, A:S.607 pi-Stacking: A:H.561, A:H.561 FAD.2: 35 residues within 4Å: Chain B: G.13, G.15, P.16, A.17, E.38, G.39, G.40, A.90, N.91, I.92, G.95, G.96, S.97, I.99, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:I.99, B:N.100, B:W.560, B:W.560, B:W.560 Hydrogen bonds: B:A.17, B:G.39, B:G.40, B:A.90, B:I.92, B:G.95, B:G.96, B:N.100, B:F.101, B:Q.102, B:M.103, B:M.103, B:V.229, B:V.229, B:S.272, B:R.283, B:W.560, B:L.594, B:N.604, B:T.605, B:T.605, B:Y.606 Water bridges: B:G.18, B:A.90, B:R.228, B:R.228 pi-Stacking: B:H.561, B:H.561 FAD.4: 34 residues within 4Å: Chain C: G.13, G.14, G.15, P.16, A.17, I.37, E.38, G.39, G.40, M.59, A.90, N.91, I.92, G.95, G.96, N.100, F.101, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 33 PLIP interactions: 33 interactions with chain C Hydrophobic interactions: C:N.100, C:F.101, C:W.560, C:W.560, C:W.560 Hydrogen bonds: C:G.14, C:A.17, C:G.39, C:G.40, C:A.90, C:I.92, C:G.95, C:G.96, C:G.96, C:S.97, C:N.100, C:F.101, C:Q.102, C:M.103, C:M.103, C:R.228, C:V.229, C:V.229, C:S.272, C:W.560, C:L.594, C:N.604, C:T.605, C:T.605, C:Y.606 Water bridges: C:S.607 pi-Stacking: C:H.561, C:H.561 FAD.6: 37 residues within 4Å: Chain D: G.13, G.14, G.15, P.16, A.17, I.37, E.38, G.39, G.40, M.59, A.90, N.91, I.92, G.95, G.96, I.99, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 33 PLIP interactions: 33 interactions with chain D Hydrophobic interactions: D:I.99, D:N.100, D:F.101, D:W.560, D:W.560, D:W.560 Hydrogen bonds: D:G.14, D:A.17, D:G.39, D:G.40, D:A.90, D:I.92, D:G.95, D:G.96, D:G.96, D:N.100, D:F.101, D:M.103, D:M.103, D:R.228, D:V.229, D:V.229, D:S.272, D:W.560, D:L.594, D:N.604, D:T.605, D:T.605, D:Y.606 Water bridges: D:A.90, D:A.90 pi-Stacking: D:H.561, D:H.561 FAD.8: 35 residues within 4Å: Chain E: G.13, G.14, G.15, P.16, A.17, I.37, E.38, G.39, G.40, M.59, A.90, N.91, I.92, G.95, G.96, I.99, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 31 PLIP interactions: 31 interactions with chain E Hydrophobic interactions: E:I.99, E:N.100, E:F.101, E:W.560, E:W.560, E:W.560 Hydrogen bonds: E:G.14, E:A.17, E:G.39, E:G.40, E:A.90, E:A.90, E:I.92, E:G.95, E:G.96, E:N.100, E:F.101, E:M.103, E:M.103, E:Y.195, E:R.228, E:V.229, E:V.229, E:S.272, E:W.560, E:L.594, E:N.604, E:T.605, E:Y.606 pi-Stacking: E:H.561 pi-Cation interactions: E:H.561 FAD.9: 37 residues within 4Å: Chain F: G.13, G.15, P.16, A.17, I.37, E.38, G.39, G.40, M.59, A.90, N.91, I.92, G.95, G.96, S.97, I.99, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 29 PLIP interactions: 29 interactions with chain F Hydrophobic interactions: F:I.99, F:N.100, F:F.101, F:W.560, F:W.560, F:W.560 Hydrogen bonds: F:A.17, F:G.39, F:G.40, F:A.90, F:I.92, F:G.95, F:G.96, F:S.97, F:N.100, F:F.101, F:M.103, F:M.103, F:R.228, F:V.229, F:V.229, F:S.272, F:W.560, F:L.594, F:N.604, F:T.605, F:Y.606 Water bridges: F:R.283 pi-Stacking: F:H.561 FAD.10: 33 residues within 4Å: Chain G: G.13, G.15, P.16, A.17, E.38, G.39, G.40, A.90, N.91, I.92, G.95, G.96, I.99, N.100, F.101, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 30 PLIP interactions: 30 interactions with chain G Hydrophobic interactions: G:I.99, G:N.100, G:W.560, G:W.560, G:W.560, G:W.560 Hydrogen bonds: G:G.14, G:A.17, G:G.39, G:G.40, G:A.90, G:I.92, G:G.95, G:G.96, G:N.100, G:F.101, G:Q.102, G:M.103, G:M.103, G:Y.195, G:R.228, G:V.229, G:V.229, G:W.560, G:L.594, G:N.604, G:T.605, G:Y.606 pi-Stacking: G:H.561, G:H.561 FAD.11: 33 residues within 4Å: Chain H: G.13, G.15, P.16, A.17, E.38, G.39, M.59, A.90, N.91, I.92, G.95, G.96, N.100, F.101, Q.102, M.103, Y.195, A.227, R.228, V.229, S.271, S.272, G.273, G.276, I.280, W.560, H.561, D.593, L.594, N.604, T.605, Y.606, A.609 31 PLIP interactions: 31 interactions with chain H Hydrophobic interactions: H:N.100, H:W.560, H:W.560, H:W.560 Hydrogen bonds: H:A.17, H:G.39, H:A.90, H:I.92, H:G.95, H:G.96, H:G.96, H:S.97, H:N.100, H:F.101, H:Q.102, H:M.103, H:M.103, H:Y.195, H:V.229, H:V.229, H:S.272, H:W.560, H:L.594, H:N.604, H:T.605, H:T.605, H:Y.606 Water bridges: H:A.90, H:A.90 pi-Stacking: H:H.561, H:H.561

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: R.57, Q.60, N.62 Chain G: P.510, G.512, L.513 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain B Hydrogen bonds: G:D.511, B:R.57, B:N.62 GOL.5: 8 residues within 4Å: Chain C: W.48, R.57, Q.60, N.62 Chain F: P.510, D.511, G.512, L.513 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain C Hydrogen bonds: F:P.510, C:R.57, C:R.57, C:N.62 GOL.7: 5 residues within 4Å: Chain D: R.81, R.488 Chain H: R.488, F.489, H.490 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.81, D:R.488, D:R.488 GOL.12: 1 residues within 4Å: Chain H: Y.146 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:Y.146 Water bridges: H:Y.146 GOL.13: 8 residues within 4Å: Chain H: D.147, G.148, P.149, P.631, H.632, A.633, P.634, V.635 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:H.632, H:V.635

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, Q.T. et al., Structure-Based Engineering of Phanerochaete chrysosporium Alcohol Oxidase for Enhanced Oxidative Power toward Glycerol. Biochemistry (2018)

Release Date

2018-10-10

Peptides

Alcohol oxidase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Alcohol oxidase