SMTL ID : 6h5d.1

Crystal structure of DHQ1 from Salmonella typhi covalently modified by ligand 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

2 x WPL: (1~{S},3~{S},4~{R},5~{R})-3-methyl-1,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid(Covalent)

WPL.1: 14 residues within 4Å: Chain A: S.21, E.46, R.48, T.80, R.82, H.143, K.170, M.203, M.205, R.213, F.225, S.232, A.233, Q.236 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.170, A:F.225, A:A.233 Hydrogen bonds: A:S.21, A:R.48, A:R.82, A:K.170, A:S.232, A:S.232, A:Q.236 Water bridges: A:E.46 Salt bridges: A:R.213 WPL.2: 14 residues within 4Å: Chain B: S.21, E.46, R.48, T.80, R.82, H.143, K.170, M.203, M.205, R.213, F.225, S.232, A.233, Q.236 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.170, B:F.225, B:A.233 Hydrogen bonds: B:S.21, B:R.48, B:R.82, B:K.170, B:S.232, B:S.232, B:Q.236 Water bridges: B:D.114 Salt bridges: B:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maneiro, M. et al., Hydroxylammonium Derivatives for Selective Active-site Lysine Modification in the Anti-virulence Bacterial Target DHQ1 Enzyme. Org Chem Front (2019)

Release Date

2019-07-24

Peptides

3-dehydroquinate dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-dehydroquinate dehydratase

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