- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.148, H2O.2
MG.4: 3 residues within 4Å:- Chain A: D.71, K.92
- Ligands: ATP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1, H2O.1, H2O.2
MG.6: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.5
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.148, H2O.4
MG.8: 3 residues within 4Å:- Chain B: D.71, K.92
- Ligands: ATP.5
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.71, H2O.3, H2O.3, H2O.4
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.7: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 4 residues within 4Å:- Chain B: H.86, Q.87, H.98, T.99
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.87, B:H.98, B:T.99
EDO.10: 6 residues within 4Å:- Chain A: E.55, F.82, Q.84
- Chain B: E.55, F.82, Q.84
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.55, B:F.82, B:Q.84, A:F.82
EDO.11: 2 residues within 4Å:- Chain B: Y.70, N.115
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.70, B:N.115
EDO.12: 2 residues within 4Å:- Chain B: F.237, N.240
No protein-ligand interaction detected (PLIP)EDO.13: 5 residues within 4Å:- Chain B: P.266, R.274, Q.277, E.278, K.281
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:P.266, B:E.278
EDO.14: 5 residues within 4Å:- Chain B: V.244, S.245, F.246, T.259, M.260
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.244, B:F.246, B:T.259
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
IB
J