- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.148
MG.4: 2 residues within 4Å:- Chain A: D.71
- Ligands: ATP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1, H2O.1, H2O.1
MG.9: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.8
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.148
MG.11: 3 residues within 4Å:- Chain B: D.71, K.92
- Ligands: ATP.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.71, H2O.3, H2O.3
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.10: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: F.82, Q.84
- Chain B: E.55, F.82
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:F.82
- Hydrogen bonds: B:E.55
EDO.6: 5 residues within 4Å:- Chain A: E.188, F.246, S.261, M.262, K.263
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.188, A:S.261, A:M.262
EDO.7: 2 residues within 4Å:- Chain A: E.120, N.121
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.120, A:N.121
EDO.12: 4 residues within 4Å:- Chain B: L.209, V.214, A.216
- Ligands: ATP.8
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.216
EDO.13: 6 residues within 4Å:- Chain B: S.178, G.179, H.180, V.199, V.200, A.201
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.178, B:H.180, B:V.200, B:A.201, B:A.201
EDO.14: 5 residues within 4Å:- Chain B: E.188, F.246, S.261, M.262, K.263
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.188, B:M.262
EDO.15: 4 residues within 4Å:- Chain B: V.200, N.251, Q.254, F.256
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.200, B:N.251
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
P