SMTL ID : 6h7d.1

Crystal Structure of A. thaliana Sugar Transport Protein 10 in complex with glucose in the outward occluded state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 12 residues within 4Å: Chain A: F.40, L.44, Q.178, T.182, I.185, Q.296, Q.297, N.302, N.333, F.402, G.407, W.411 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.178, A:Q.296, A:Q.297, A:Q.297, A:N.302, A:N.302, A:N.333, A:N.333, A:W.411

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 13 residues within 4Å: Chain A: S.47, T.51, Y.77, F.80, F.88, T.89, Y.93, R.143, F.306, T.438, G.442, Q.443, L.446 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.47, A:T.51, A:R.143

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: E.55, K.59, Q.200, H.201, W.203, R.204 Ligands: OLC.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.200, A:H.201, A:W.203 Salt bridges: A:H.201, A:R.204

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 12 residues within 4Å: Chain A: F.61, M.84, L.85, F.88, S.91, L.94, A.95, V.98, M.102, I.140, L.144, V.148 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.88, A:L.94, A:V.98, A:V.98, A:I.140, A:L.144, A:V.148 OLC.5: 10 residues within 4Å: Chain A: I.328, V.332, L.335, S.336, V.339, D.389, L.392, A.393, C.396 Ligands: OLC.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.328, A:V.332, A:L.335 Hydrogen bonds: A:D.389 OLC.6: 9 residues within 4Å: Chain A: E.355, Q.359, C.363, D.389, W.390, A.393, F.394, V.397 Ligands: OLC.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.355, A:A.393, A:F.394, A:V.397, A:V.397 OLC.7: 10 residues within 4Å: Chain A: I.27, I.31, M.35, L.38, A.172, L.173, G.176, I.183, V.187, I.341 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.31, A:L.38, A:I.183, A:I.183, A:V.187, A:I.341 Hydrogen bonds: A:G.176 OLC.8: 5 residues within 4Å: Chain A: F.132, H.201, R.204, G.208 Ligands: PO4.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.132, A:F.132 Salt bridges: A:H.201, A:R.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paulsen, P.A. et al., Crystal structure of the plant symporter STP10 illuminates sugar uptake mechanism in monosaccharide transporter superfamily. Nat Commun (2019)

Release Date

2019-02-06

Peptides

Sugar transport protein 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sugar transport protein 10