SMTL ID : 6hak.1 (1 other biounit)

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with a double stranded RNA represents the RT transcription initiation complex prior to nucleotide incorporation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 11 residues within 4Å: Chain B: V.37, W.40, D.92, R.94, E.95, K.98, K.411, E.415, E.429, W.430, F.432 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.94, B:K.411, B:W.430, B:E.95, B:E.95, B:K.98, B:E.429, B:E.429, B:W.430, B:W.430

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.445, G.446, N.500, D.551 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.445, A:D.445, A:D.551, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Structure of HIV-1 RT/dsRNA initiation complex prior to nucleotide incorporation. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-04-03

Peptides

Gag-Pol polyprotein: A
Gag-Pol polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein

Gag-Pol polyprotein

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