SMTL ID : 6hbd.2 (1 other biounit)

Crystal structure of MSMEG_1712 from Mycobacterium smegmatis in complex with Beta-D-Galactofuranose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.158, D.162 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.158, A:D.162 ZN.2: 6 residues within 4Å: Chain A: E.260, E.291, F.293, R.305, L.309, A.312 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.260, A:E.260, A:E.291, H2O.1 ZN.3: 3 residues within 4Å: Chain A: V.287, H.317, H.319 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.317, A:H.319, H2O.1 ZN.4: 3 residues within 4Å: Chain A: P.283, H.318, H.320 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.318, A:H.320 ZN.5: 3 residues within 4Å: Chain A: E.268, H.316, H.318 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.316, A:H.318, H2O.1, H2O.1 ZN.6: 2 residues within 4Å: Chain A: H.244, D.245 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.245

1 x GZL: beta-D-galactofuranose(Non-covalent)

GZL.7: 16 residues within 4Å: Chain A: E.28, S.29, W.31, R.32, S.80, D.105, R.106, A.122, F.124, P.159, R.163, F.187, N.213, V.240, D.241, C.261 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.29, A:S.29, A:R.32, A:R.106, A:R.163, A:R.163, A:N.213, A:D.241, A:D.241 Salt bridges: A:R.32, A:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Detection and Characterization of a Mycobacterial L-Arabinofuranose ABC Transporter Identified with a Rapid Lipoproteomics Protocol. Cell Chem Biol (2019)

Release Date

2019-05-01

Peptides

ABC transporter periplasmic-binding protein YtfQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ABC transporter periplasmic-binding protein YtfQ

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