- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-octamer
- Ligands
- 92 x TB: TERBIUM(III) ION(Non-covalent)(Non-functional Binders)
- 8 x 48F: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate(Non-covalent)
48F.13: 28 residues within 4Å:- Chain A: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, I.240, F.241, M.244
- Chain G: H.159, D.161
20 PLIP interactions:19 interactions with chain A, 1 interactions with chain G- Hydrogen bonds: A:G.37, A:S.40, A:S.40, A:S.40, A:R.60, A:R.60, A:G.67, A:V.133, A:V.133, A:S.179, A:M.226, A:I.240
- Water bridges: A:G.38, A:G.41, A:H.61, A:H.61, A:G.66, A:G.175, A:G.175
- Salt bridges: G:H.159
48F.27: 27 residues within 4Å:- Chain B: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, F.241, M.244
- Chain F: H.159, D.161
22 PLIP interactions:20 interactions with chain B, 2 interactions with chain F- Hydrogen bonds: B:G.37, B:S.40, B:S.40, B:S.40, B:R.60, B:R.60, B:H.61, B:G.66, B:G.67, B:V.133, B:V.133, B:S.179, B:M.226, B:M.237, B:G.238
- Water bridges: B:G.38, B:G.41, B:G.175, B:G.175, B:H.176, F:H.159
- Salt bridges: F:H.159
48F.42: 28 residues within 4Å:- Chain C: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, I.240, F.241, M.244
- Chain E: H.159, D.161
20 PLIP interactions:19 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:G.37, C:S.40, C:S.40, C:S.40, C:R.60, C:R.60, C:G.67, C:V.133, C:V.133, C:S.179, C:M.226, C:I.240
- Water bridges: C:G.38, C:G.41, C:H.61, C:H.61, C:G.66, C:G.175, C:G.175
- Salt bridges: E:H.159
48F.56: 27 residues within 4Å:- Chain D: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, F.241, M.244
- Chain H: H.159, D.161
22 PLIP interactions:2 interactions with chain H, 20 interactions with chain D- Water bridges: H:H.159, D:G.38, D:G.41, D:G.175, D:G.175, D:H.176
- Salt bridges: H:H.159
- Hydrogen bonds: D:G.37, D:S.40, D:S.40, D:S.40, D:R.60, D:R.60, D:H.61, D:G.66, D:G.67, D:V.133, D:V.133, D:S.179, D:M.226, D:M.237, D:G.238
48F.71: 28 residues within 4Å:- Chain A: H.159, D.161
- Chain E: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, I.240, F.241, M.244
20 PLIP interactions:19 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:G.37, E:S.40, E:S.40, E:S.40, E:R.60, E:R.60, E:G.67, E:V.133, E:V.133, E:S.179, E:M.226, E:I.240
- Water bridges: E:G.38, E:G.41, E:H.61, E:H.61, E:G.66, E:G.175, E:G.175
- Salt bridges: A:H.159
48F.85: 27 residues within 4Å:- Chain D: H.159, D.161
- Chain F: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, F.241, M.244
22 PLIP interactions:20 interactions with chain F, 2 interactions with chain D- Hydrogen bonds: F:G.37, F:S.40, F:S.40, F:S.40, F:R.60, F:R.60, F:H.61, F:G.66, F:G.67, F:V.133, F:V.133, F:S.179, F:M.226, F:M.237, F:G.238
- Water bridges: F:G.38, F:G.41, F:G.175, F:G.175, F:H.176, D:H.159
- Salt bridges: D:H.159
48F.100: 28 residues within 4Å:- Chain C: H.159, D.161
- Chain G: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, I.240, F.241, M.244
20 PLIP interactions:19 interactions with chain G, 1 interactions with chain C- Hydrogen bonds: G:G.37, G:S.40, G:S.40, G:S.40, G:R.60, G:R.60, G:G.67, G:V.133, G:V.133, G:S.179, G:M.226, G:I.240
- Water bridges: G:G.38, G:G.41, G:H.61, G:H.61, G:G.66, G:G.175, G:G.175
- Salt bridges: C:H.159
48F.114: 27 residues within 4Å:- Chain B: H.159, D.161
- Chain H: V.35, G.36, G.37, G.38, P.39, S.40, L.58, E.59, R.60, H.61, G.66, G.67, V.131, A.132, V.133, A.173, T.174, G.175, S.179, G.225, M.226, M.237, G.238, F.241, M.244
22 PLIP interactions:20 interactions with chain H, 2 interactions with chain B- Hydrogen bonds: H:G.37, H:S.40, H:S.40, H:S.40, H:R.60, H:R.60, H:H.61, H:G.66, H:G.67, H:V.133, H:V.133, H:S.179, H:M.226, H:M.237, H:G.238
- Water bridges: H:G.38, H:G.41, H:G.175, H:G.175, H:H.176, B:H.159
- Salt bridges: B:H.159
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 6 residues within 4Å:- Chain A: D.26, V.27, K.54, V.55, G.124, K.126
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.26, A:V.55
- Water bridges: A:V.55, A:G.124
GOL.43: 6 residues within 4Å:- Chain C: D.26, V.27, K.54, V.55, G.124, K.126
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.26, C:V.55
- Water bridges: C:V.55, C:G.124
GOL.72: 6 residues within 4Å:- Chain E: D.26, V.27, K.54, V.55, G.124, K.126
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:D.26, E:V.55
- Water bridges: E:V.55, E:G.124
GOL.101: 6 residues within 4Å:- Chain G: D.26, V.27, K.54, V.55, G.124, K.126
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:D.26, G:V.55
- Water bridges: G:V.55, G:G.124
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.15: 4 residues within 4Å:- Chain A: E.216, V.217, Y.218, P.219
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.216
PGE.29: 4 residues within 4Å:- Chain B: E.216, V.217, Y.218, P.219
No protein-ligand interaction detected (PLIP)PGE.44: 4 residues within 4Å:- Chain C: E.216, V.217, Y.218, P.219
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.216
PGE.58: 4 residues within 4Å:- Chain D: E.216, V.217, Y.218, P.219
No protein-ligand interaction detected (PLIP)PGE.73: 4 residues within 4Å:- Chain E: E.216, V.217, Y.218, P.219
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.216
PGE.87: 4 residues within 4Å:- Chain F: E.216, V.217, Y.218, P.219
No protein-ligand interaction detected (PLIP)PGE.102: 4 residues within 4Å:- Chain G: E.216, V.217, Y.218, P.219
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:E.216
PGE.116: 4 residues within 4Å:- Chain H: E.216, V.217, Y.218, P.219
No protein-ligand interaction detected (PLIP)- 4 x NA: SODIUM ION(Non-functional Binders)
NA.28: 5 residues within 4Å:- Chain A: Y.10
- Chain B: I.28, T.164, I.165, N.166
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.28, B:T.164, B:N.166
NA.57: 5 residues within 4Å:- Chain C: Y.10
- Chain D: I.28, T.164, I.165, N.166
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.164, D:T.164, D:N.166
NA.86: 5 residues within 4Å:- Chain E: Y.10
- Chain F: I.28, T.164, I.165, N.166
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:T.164, F:T.164, F:N.166
NA.115: 5 residues within 4Å:- Chain G: Y.10
- Chain H: I.28, T.164, I.165, N.166
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:T.164, H:N.166, H:N.166
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engilberge, S. et al., Protein crystal structure determination with the crystallophore, a nucleating and phasing agent. J.Appl.Crystallogr. (2019)
- Release Date
- 2019-06-19
- Peptides
- Thiazole synthase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
EC
AD
EE
AF
EG
AH
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-octamer
- Ligands
- 92 x TB: TERBIUM(III) ION(Non-covalent)(Non-functional Binders)
- 8 x 48F: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Engilberge, S. et al., Protein crystal structure determination with the crystallophore, a nucleating and phasing agent. J.Appl.Crystallogr. (2019)
- Release Date
- 2019-06-19
- Peptides
- Thiazole synthase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
EC
AD
EE
AF
EG
AH
E