SMTL ID : 6hmg.1

Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with alpha-Glc-1,3-(1,2-anhydro-carba-glucosamine)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: K.212, S.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.219, A:S.219 Salt bridges: A:K.212

1 x GDQ: (1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol(Non-covalent)

GDQ.2: 9 residues within 4Å: Chain A: Y.51, W.131, H.159, E.161, Y.200, Y.257, E.338, E.341 Ligands: GLC.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.257 Hydrogen bonds: A:E.161 Water bridges: A:E.341

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.3: 10 residues within 4Å: Chain A: W.53, H.65, H.68, W.131, I.299, R.300, E.338, H.340, E.341 Ligands: GDQ.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.65, A:R.300, A:R.300, A:E.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, D. et al., From 1,4-Disaccharide to 1,3-Glycosyl Carbasugar: Synthesis of a Bespoke Inhibitor of Family GH99 Endo-alpha-mannosidase. Org.Lett. (2018)

Release Date

2018-09-26

Peptides

Glycosyl hydrolase family 71: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 71

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