SMTL ID : 6hqf.1

Structure of Phenylalanine ammonia-lyase from Petroselinum crispum in complex with (R)-APEP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

4 x PPH: [(1R)-1-amino-2-phenylethyl]phosphonic acid(Covalent)

PPH.1: 14 residues within 4Å: Chain A: Y.110, F.116, G.117, F.137, X.202, L.204, N.258, N.382, F.398, E.482 Chain B: K.454 Chain D: Q.346, Y.349, R.352 12 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: B:K.454, A:F.116, A:F.137, A:L.204, A:L.204 Hydrogen bonds: A:Y.110, A:N.258, A:N.382, D:Q.346, D:R.352, D:R.352 Water bridges: A:G.117 PPH.2: 13 residues within 4Å: Chain A: K.454 Chain B: Y.110, F.116, G.117, X.202, L.204, N.258, N.382, F.398, E.482 Chain C: Q.346, Y.349, R.352 15 PLIP interactions: 9 interactions with chain B, 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:F.116, B:L.204, B:L.204, A:K.454 Hydrogen bonds: B:Y.110, B:N.258, B:N.258, B:N.382, C:Q.346, C:Y.349, C:Y.349, C:R.352, C:R.352 Water bridges: B:G.117, B:G.117 PPH.3: 14 residues within 4Å: Chain B: Q.346, Y.349, R.352 Chain C: Y.110, F.116, G.117, F.137, X.202, L.204, N.258, N.382, F.398, E.482 Chain D: K.454 14 PLIP interactions: 1 interactions with chain D, 9 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: D:K.454, C:F.116, C:F.137, C:L.204, C:L.204 Hydrogen bonds: C:Y.110, C:Y.110, C:N.258, C:N.382, B:Q.346, B:Y.349, B:R.352, B:R.352 Water bridges: C:G.117 PPH.4: 13 residues within 4Å: Chain A: Q.346, Y.349, R.352 Chain C: K.454 Chain D: Y.110, F.116, G.117, X.202, L.204, N.258, N.382, F.398, E.482 13 PLIP interactions: 8 interactions with chain D, 1 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: D:F.116, D:L.204, D:L.204, C:K.454 Hydrogen bonds: D:N.258, D:N.258, D:N.382, A:Q.346, A:Y.349, A:R.352, A:R.352 Water bridges: D:G.117, D:G.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bata, Z. et al., Substrate Tunnel Engineering Aided by X-ray Crystallography and Functional Dynamics Swaps the Function of MIO-Enzymes. Acs Catalysis (2021)

Release Date

2019-10-09

Peptides

Phenylalanine ammonia-lyase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phenylalanine ammonia-lyase 1

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