SMTL ID : 6hsj.2 (1 other biounit)

Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1) in complex with CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.46, P.197, Y.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.25, A:R.46, A:R.46 Water bridges: A:E.42 GOL.2: 7 residues within 4Å: Chain A: E.170, K.174, Y.175, S.272, M.274, K.275, Y.279 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.170, A:K.174, A:Y.175, A:S.272

1 x COA: COENZYME A(Non-covalent)

COA.3: 13 residues within 4Å: Chain A: K.28, C.95, A.160, F.164, F.201, R.214, L.222, C.225, C.226, P.227, T.228, C.308, H.356 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.228 Hydrogen bonds: A:R.214, A:C.225, A:C.226 Water bridges: A:Q.200, A:T.228, A:T.228 Salt bridges: A:K.28, A:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiema, T.R. et al., The peroxisomal zebrafish SCP2-thiolase (type-1) is a weak transient dimer as revealed by crystal structures and native mass spectrometry. Biochem. J. (2019)

Release Date

2019-01-02

Peptides

SCP2-thiolase (type-1): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SCP2-thiolase (type-1)

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