- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 5 residues within 4Å:- Chain A: G.150, A.153, W.154, E.157
- Ligands: MPD.5
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.153, A:E.157
- Water bridges: A:E.157
MPD.3: 5 residues within 4Å:- Chain A: H.12, V.139
- Chain B: R.94, T.101, C.110
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:V.139
- Hydrogen bonds: A:H.12
- Water bridges: B:T.101, B:T.101
MPD.4: 5 residues within 4Å:- Chain A: R.94, C.110, P.111
- Chain B: H.12, V.139
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:R.94, B:V.139
- Hydrogen bonds: A:R.94
MPD.5: 3 residues within 4Å:- Chain A: D.146, P.149
- Ligands: MPD.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.146, A:D.146
MPD.6: 2 residues within 4Å:- Chain A: W.9, V.35
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.9, A:V.35
- Water bridges: A:W.9
MPD.7: 1 residues within 4Å:- Chain A: S.21
No protein-ligand interaction detected (PLIP)MPD.10: 3 residues within 4Å:- Chain A: P.98
- Chain B: E.31, W.154
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:P.98
- Hydrogen bonds: A:P.98
MPD.11: 2 residues within 4Å:- Chain B: A.109, A.113
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.109, B:A.113
- Water bridges: B:C.90
MPD.12: 6 residues within 4Å:- Chain B: S.48, G.51, V.53, R.54, S.55, T.66
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:T.66
MPD.13: 3 residues within 4Å:- Chain B: A.122, A.125, S.126
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.122, B:A.125
MPD.14: 5 residues within 4Å:- Chain A: P.111, A.115
- Chain B: D.134, L.135, T.138
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.115, B:L.135
- Hydrogen bonds: A:P.111
MPD.15: 6 residues within 4Å:- Chain A: I.93, R.96
- Chain B: H.33, V.35, Y.39
- Ligands: GOL.16
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.93, B:V.35
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 6 residues within 4Å:- Chain A: D.85, P.86, A.87, E.120, R.124
- Chain B: M.1
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Water bridges: B:M.1, B:M.1
- Hydrogen bonds: A:D.85, A:A.87, A:E.120, A:R.124
GOL.16: 4 residues within 4Å:- Chain B: G.5, G.6, Y.39
- Ligands: MPD.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.5, B:Y.39
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Volbeda, A. et al., Crystal Structure of the Transcription Regulator RsrR Reveals a [2Fe-2S] Cluster Coordinated by Cys, Glu, and His Residues. J. Am. Chem. Soc. (2019)
- Release Date
- 2019-01-30
- Peptides
- Rrf2 family transcriptional regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Volbeda, A. et al., Crystal Structure of the Transcription Regulator RsrR Reveals a [2Fe-2S] Cluster Coordinated by Cys, Glu, and His Residues. J. Am. Chem. Soc. (2019)
- Release Date
- 2019-01-30
- Peptides
- Rrf2 family transcriptional regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D